suba logo
AT1G07050.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : CCT motif family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
CCT motif family protein; CONTAINS InterPro DOMAIN/s: CCT domain (InterPro:IPR010402); BEST Arabidopsis thaliana protein match is: CCT motif family protein (TAIR:AT4G25990.1); Has 1772 Blast hits to 1772 proteins in 105 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 2; Plants - 1711; Viruses - 0; Other Eukaryotes - 58 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5641eggNOG:KOG1601EMBL:AB493438EMBL:AK176556EMBL:AY085907EMBL:CP002684EnsemblPlants:AT1G07050
EnsemblPlants:AT1G07050.1entrez:837216GeneID:837216Gramene:AT1G07050.1hmmpanther:PTHR31874hmmpanther:PTHR31874:SF9HOGENOM:HOG000090331
InterPro:IPR010402KEGG:ath:AT1G07050OMA:NHQEVIDPfam:PF06203Pfscan:PS51017PhylomeDB:Q8LDM8PROSITE:PS51017
Proteomes:UP000006548RefSeq:NP_563778.1STRING:3702.AT1G07050.1TAIR:AT1G07050UniGene:At.42316UniProt:Q8LDM8
Coordinates (TAIR10) chr1:-:2164327..2165133
Molecular Weight (calculated) 23321.60 Da
IEP (calculated) 4.70
GRAVY (calculated) -1.31
Length 195 amino acids
Sequence (TAIR10)
(BLAST)
001: MDTQRLPKKE EEEEEDHLLS STFESINGHS RDQHNHSIDD FESIFDITID NLSCSNELTW DFWEEDEDED VGEEEKRSST DQEGSSFGFW ENKPTDYEDK
101: DLGLKLNLNH QEVIDAWSDH QKPLWTDTST LDNSVYRGEV PVIEEKRNMR REASVLRYKE KRQSRLFSKK IRYQVRKLNA DKRPRFKGRF VKRET
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)