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AT1G07040.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:27943495 (2017): mitochondrion
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:20061580 (2010): plastid plastid stroma
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G27030.1); Has 540 Blast hits to 538 proteins in 187 species: Archae - 0; Bacteria - 333; Metazoa - 0; Fungi - 0; Plants - 67; Viruses - 0; Other Eukaryotes - 140 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IE0TeggNOG:ENOG410Z3E0EMBL:AC067971EMBL:AK226231EMBL:AY087534EMBL:BT002383EMBL:BT008835
EMBL:CP002684EnsemblPlants:AT1G07040EnsemblPlants:AT1G07040.1entrez:837215GeneID:837215Gramene:AT1G07040.1hmmpanther:PTHR31136
hmmpanther:PTHR31136:SF1HOGENOM:HOG000281323InterPro:IPR009770KEGG:ath:AT1G07040ncoils:CoilOMA:WEKPIYSPfam:PF07063
PhylomeDB:Q9LMJ7PIR:B86205Proteomes:UP000006548RefSeq:NP_563777.1SMART:SM01150SMR:Q9LMJ7STRING:3702.AT1G07040.1
TAIR:AT1G07040UniGene:At.17142UniProt:Q9LMJ7
Coordinates (TAIR10) chr1:-:2161225..2163035
Molecular Weight (calculated) 40640.10 Da
IEP (calculated) 9.13
GRAVY (calculated) -0.25
Length 371 amino acids
Sequence (TAIR10)
(BLAST)
001: MISLHSSAIK ASLYGSFPSS LRSTLSVSFS AGSLIRLPSV GKRNLSVVVS SGRDSSMSSN NVSRGSSSKV AAESFFRSVL GQMETVYLNR NPTPKSVLEL
101: VRSVDDQQLC YDHLAFRTFG IGGYGIDSLA SFFLDYGYTP MDELKFPAKK LRALWFAPPN ASAVPGGSGV NGPLPRVFIS ELLVDQMSSQ TQDVIRKYTE
201: ASPNGKKYAG LSSALGTLTW EKPLSSEFEQ LARESEYAAW TLVNGYALNH VTISVHRLKS HLNKIKKLNQ FLEEKGIKLN SEGGVLKVSP DGGLQQSSTV
301: ADSISFKFAD GVTKSIPCSY IEFAERLVLP QYQNIPESEI QESHRRDGFE VGNADKIFES TFQEQLSRRT G
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)