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AT1G06930.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.490
nucleus 0.480
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; Has 4478 Blast hits to 355 proteins in 82 species: Archae - 0; Bacteria - 29; Metazoa - 379; Fungi - 125; Plants - 120; Viruses - 25; Other Eukaryotes - 3800 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JTH4eggNOG:ENOG41107UNEMBL:AY924656EMBL:CP002684
EMBL:DQ132642EnsemblPlants:AT1G06930EnsemblPlants:AT1G06930.1entrez:837204
GeneID:837204Gramene:AT1G06930.1hmmpanther:PTHR33257hmmpanther:PTHR33257:SF5
HOGENOM:HOG000214994KEGG:ath:AT1G06930OMA:AKSSGCYProteomes:UP000006548
RefSeq:NP_172175.1TAIR:AT1G06930UniGene:At.51509UniGene:At.73238
UniProt:Q5BQ22
Coordinates (TAIR10) chr1:+:2129163..2129672
Molecular Weight (calculated) 18055.90 Da
IEP (calculated) 10.58
GRAVY (calculated) -0.51
Length 169 amino acids
Sequence (TAIR10)
(BLAST)
001: MPQLDRSRVS TTKLILSVAV EGDYYGGSSA AVPFKWESQP GTPRRLSKRS SSSGFNSDSD FNFPVSAPLT PPPSYFYASP SSTKHVSPKK TNTLFSSLLS
101: KNRSVPSSPA SSSSSSSSSV PSSPLRTSDL SNRRRSMWFE SGSSLDYGSN SAKSSGCYAS LVKVLLRSC
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)