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AT1G06920.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 0.987
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : ovate family protein 4
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
ovate family protein 4 (OFP4); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF623 (InterPro:IPR006458); BEST Arabidopsis thaliana protein match is: ovate family protein 2 (TAIR:AT2G30400.1); Has 524 Blast hits to 514 proteins in 51 species: Archae - 0; Bacteria - 6; Metazoa - 52; Fungi - 2; Plants - 429; Viruses - 0; Other Eukaryotes - 35 (source: NCBI BLink).
Protein Annotations
BioGrid:22443eggNOG:ENOG410IZRQeggNOG:ENOG410YV5MEMBL:AC011001
EMBL:CP002684EnsemblPlants:AT1G06920EnsemblPlants:AT1G06920.1entrez:837202
GeneID:837202GO:GO:0003677GO:GO:0005634GO:GO:0006351
GO:GO:0045892GO:GO:2000652Gramene:AT1G06920.1hmmpanther:PTHR33057
hmmpanther:PTHR33057:SF22HOGENOM:HOG000238410InParanoid:F4HNU8IntAct:F4HNU8
InterPro:IPR006458InterPro:IPR025830KEGG:ath:AT1G06920OMA:KVFVQVW
PaxDb:F4HNU8Pfam:F4HNU8Pfam:PF04844Pfam:PF13724
Pfscan:PS51754PIR:A86204PRIDE:F4HNU8PRO:PR:F4HNU8
PROSITE:PS51754Proteomes:UP000006548RefSeq:NP_172174.1STRING:3702.AT1G06920.1
TAIR:AT1G06920tair10-symbols:ATOFP4tair10-symbols:OFP4TIGRfam:TIGR01568
TIGRFAMs:TIGR01568UniGene:At.65891UniProt:F4HNU8
Coordinates (TAIR10) chr1:-:2124854..2125801
Molecular Weight (calculated) 36464.60 Da
IEP (calculated) 10.87
GRAVY (calculated) -0.87
Length 315 amino acids
Sequence (TAIR10)
(BLAST)
001: MRNYKLRLSV MSPSEWFHKL KNMTKPRKKH SLPLYSINTT KKRKPSSESK SLPYSSTSYF FNRSRSRTSF ESRILQISPR NSLHNIQSKR KTVYKPSPPS
101: SSIVSAGFNK TFHQSHDSLS ASSNLKVISS EDDIIIDMNN RDFKKKTFKE ITKFDSTEKA CRASNRTKET HIPHHLSVKV SKEKEDEEED ACRTKKKHQK
201: TLVSSGRRSS AKSPRIKLRA RSPRIQVSPR RSKSRSQNKQ ILDSFAVIKS SIDPSKDFRE SMVEMIAENN IRTSNDMEDL LVCYLTLNPK EYHDLIIKVF
301: VQVWLEVINS TFASK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)