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AT1G06910.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : TRF-like 7
Curator
Summary (TAIR10)
Arabidopsis thaliana myb family transcription factor (At1g06910)
Computational
Description (TAIR10)
TRF-like 7 (TRFL7); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: response to jasmonic acid stimulus, response to salicylic acid stimulus; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: myb-like HTH transcriptional regulator family protein (TAIR:AT5G58340.2); Has 82 Blast hits to 80 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 5; Plants - 66; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JVY0eggNOG:ENOG41105G8EMBL:AY519534EMBL:CP002684EnsemblPlants:AT1G06910EnsemblPlants:AT1G06910.1entrez:837201
Gene3D:1.10.10.60GeneID:837201GO:GO:0000783GO:GO:0003691GO:GO:0009751GO:GO:0009753Gramene:AT1G06910.1
HOGENOM:HOG000143463IntAct:Q6R0E4InterPro:IPR001005InterPro:IPR009057InterPro:IPR017930KEGG:ath:AT1G06910ncoils:Coil
OMA:ANWKRIKPfscan:PS51294PhylomeDB:Q6R0E4PROSITE:PS51294Proteomes:UP000006548RefSeq:NP_683280.1SMART:SM00717
SMR:Q6R0E4SUPFAM:SSF46689TAIR:AT1G06910tair10-symbols:TRFL7UniGene:At.49861UniProt:Q6R0E4
Coordinates (TAIR10) chr1:+:2121099..2122914
Molecular Weight (calculated) 44346.70 Da
IEP (calculated) 5.01
GRAVY (calculated) -0.71
Length 390 amino acids
Sequence (TAIR10)
(BLAST)
001: MALSQWKEAI LEGIFMEIED GIVEEKNLER LENLVEILHK EGSKVPKSVT EAYCKVAVEC TVKCLAYEKD AKKAYTEAIK TIWLGRIMPL CDKVSCLVTL
101: DLLKCCRRLW KAHTDDKACK TLMDEDTRDK ALVCLRKVVL DLNPNLVLEN LNMDESDEIE SSEESEETES MVEAREGVGN QNSQASEAME EDDQESLLDT
201: ELERPTSGGS KAVYVPSQFN PIPSAVVDRA LRKLRASKIE LMKALEKGRP SNLNNETITE QENDVANPSA TNAAPRPSLM EPRSTAHTYE WNDSIDDSDG
301: EMGDDIERIN KSKRKRIVVS PLKRNRCSEG ARRPKLPWST AETLAVLKGY EKYGANWKRI KDENPVLVRR TNGDIKDKFR VEMRREERRH
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)