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AT1G06820.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24872594 (2014): plastid plastid envelope plastid inner membrane
  • PMID:20061580 (2010): plastid plastid envelope
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : carotenoid isomerase
Curator
Summary (TAIR10)
Encodes carotenoid isomerase. Catalyzes the isomerization of poly-cis-carotenoids to all-trans-carotenoids. Together with PDS and ZDS, CRTiso is required to complete the synthesis of lycopene from phytoene.
Computational
Description (TAIR10)
carotenoid isomerase (CRTISO); CONTAINS InterPro DOMAIN/s: Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal (InterPro:IPR003953), Carotene isomerase (InterPro:IPR014101); BEST Arabidopsis thaliana protein match is: FAD/NAD(P)-binding oxidoreductase family protein (TAIR:AT1G57770.1); Has 6522 Blast hits to 6439 proteins in 939 species: Archae - 207; Bacteria - 2788; Metazoa - 150; Fungi - 77; Plants - 203; Viruses - 0; Other Eukaryotes - 3097 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G06820-MONOMERBioCyc:MetaCyc:AT1G06820-MONOMERBioGrid:22434EC:5.2.1.13eggNOG:COG1233eggNOG:KOG4254EMBL:AC011001
EMBL:BX813870EMBL:CP002684EnsemblPlants:AT1G06820EnsemblPlants:AT1G06820.1entrez:837193Gene3D:3.50.50.60GeneID:837193
Genevisible:Q9M9Y8GO:GO:0009662GO:GO:0016117GO:GO:0016491GO:GO:0031969GO:GO:0046608Gramene:AT1G06820.1
gramene_pathway:5.2.1.-gramene_pathway:PWY-6475hmmpanther:PTHR10668hmmpanther:PTHR10668:SF5HOGENOM:HOG000150223InParanoid:Q9M9Y8InterPro:IPR002937
InterPro:IPR014101InterPro:IPR023753iPTMnet:Q9M9Y8KEGG:00906+5.2.1.13KEGG:ath:AT1G06820KO:K09835MINT:MINT-8067289
OMA:IIHAFTPPaxDb:Q9M9Y8Pfam:PF01593Pfam:Q9M9Y8PhylomeDB:Q9M9Y8PIR:A86203PRIDE:Q9M9Y8
PRO:PR:Q9M9Y8ProteinModelPortal:Q9M9Y8Proteomes:UP000006548RefSeq:NP_172167.2SMR:Q9M9Y8STRING:3702.AT1G06820.1SUPFAM:SSF51905
TAIR:AT1G06820tair10-symbols:CCR2tair10-symbols:CRTISOTIGRfam:TIGR02730TIGRFAMs:TIGR02730UniGene:At.47600UniGene:At.51507
UniGene:At.67219UniPathway:UPA00803UniProt:Q9M9Y8
Coordinates (TAIR10) chr1:-:2093145..2096220
Molecular Weight (calculated) 65432.20 Da
IEP (calculated) 8.24
GRAVY (calculated) -0.08
Length 595 amino acids
Sequence (TAIR10)
(BLAST)
001: MDLCFQNPVK CGDRLFSALN TSTYYKLGTS NLGFNGPVLE NRKKKKKLPR MVTVKSVSSS VVASTVQGTK RDGGESLYDA IVIGSGIGGL VAATQLAVKE
101: ARVLVLEKYL IPGGSSGFYE RDGYTFDVGS SVMFGFSDKG NLNLITQALK AVGRKMEVIP DPTTVHFHLP NNLSVRIHRE YDDFIAELTS KFPHEKEGIL
201: GFYGDCWKIF NSLNSLELKS LEEPIYLFGQ FFQKPLECLT LAYYLPQNAG AIARKYIKDP QLLSFIDAEC FIVSTVNALQ TPMINASMVL CDRHYGGINY
301: PVGGVGGIAK SLAEGLVDQG SEIQYKANVK SIILDHGKAV GVRLADGREF FAKTIISNAT RWDTFGKLLK GEKLPKEEEN FQKVYVKAPS FLSIHMGVKA
401: EVLPPDTDCH HFVLEDDWKN LEEPYGSIFL SIPTILDSSL APDGRHILHI FTTSSIEDWE GLPPKEYEAK KEDVAARIIQ RLEKKLFPGL SSSITFKEVG
501: TPRTHRRFLA RDKGTYGPMP RGTPKGLLGM PFNTTAIDGL YCVGDSCFPG QGVIAVAFSG VMCAHRVAAD IGLEKKSRVL DVGLLGLLGW LRTLA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)