AT1G06800.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : alpha/beta-Hydrolases superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a lipase that hydrolyzes phosphatidylcholine, glycolipids as well as triacylglycerols. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
alpha/beta-Hydrolases superfamily protein; FUNCTIONS IN: galactolipase activity, triglyceride lipase activity, phospholipase A1 activity; INVOLVED IN: lipid metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Lipase, class 3 (InterPro:IPR002921); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT2G30550.2); Has 1444 Blast hits to 1435 proteins in 292 species: Archae - 0; Bacteria - 280; Metazoa - 45; Fungi - 276; Plants - 599; Viruses - 3; Other Eukaryotes - 241 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:2089538..2091443 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 58448.30 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.77 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.52 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 515 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MATIPSHNLR PHTTNQRTQY SLSFRPHFSR STLITFPARS SPARAMSRTD EEASISTRLE QESYGLTTAE DIRRRDGEAK ESKRLRDTWR KIQGEDDWAG 101: LMDPMDPVLR SELIRYGEMA QACYDAFDFD PFSRYCGSCR FTRRHLFDSL GIIDSGYEVA RYLYATSNIN LPNFFSKSRW SKVWSKNANW MGYVAVSDDN 201: EATRCRLGRR DIAIAWRGTV TRLEWIADLK DFLKPVSGNG FRCPDPAVKA ESGFLDLYTD KDTSCNFSKF SAREQVLTEV KRLVERYGDE EGEELSITVT 301: GHSLGGALAV LSAYDVAEMG VNRTRKGKVI PVTAFTYGGP RVGNIRFKER IEKLGVKVLR VVNEHDVVAK SPGLFLNERA PQALMKLAGG LPWCYSHVGE 401: MLPLDHQKSP FLKPTVDLST AHNLEALLHL LDGYHGKGQR FVLSSGRDPA LVNKASDFLK DHFMVPPYWR QDANKGMVRN TDGRWIQPDR IRADDQHAPD 501: IHQLLTQLHH PSQLL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)