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AT1G06670.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : nuclear DEIH-boxhelicase
Curator
Summary (TAIR10)
nuclear DEIH-box helicase (NIH) encoding a putative RNA and/or DNA helicase homologous to a group of nucleic acid helicases from the DEAD/H family with nuclear DEIH-box helicase (NIH) distinct N- and C-terminal regions that differ from animal DEIH proteins
Computational
Description (TAIR10)
nuclear DEIH-boxhelicase (NIH); CONTAINS InterPro DOMAIN/s: Helicase-associated domain (InterPro:IPR007502), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), Ankyrin repeat-containing domain (InterPro:IPR020683), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Single-stranded nucleic acid binding R3H (InterPro:IPR001374), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: helicase in vascular tissue and tapetum (TAIR:AT2G30800.1); Has 26020 Blast hits to 16191 proteins in 1841 species: Archae - 22; Bacteria - 7563; Metazoa - 5966; Fungi - 2932; Plants - 1417; Viruses - 339; Other Eukaryotes - 7781 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-833-MONOMEREC:3.6.4.12EC:3.6.4.13EMBL:AC007592EMBL:CP002684EMBL:D84225EnsemblPlants:AT1G06670
EnsemblPlants:AT1G06670.1entrez:837177Gene3D:1.25.40.20Gene3D:3.30.1370.50Gene3D:3.40.50.300GeneID:837177GO:GO:0003677
GO:GO:0003678GO:GO:0004004GO:GO:0005524GO:GO:0005634GO:GO:0006259GO:GO:0006396GO:GO:0032508
GO:GO:0044822Gramene:AT1G06670.1hmmpanther:PTHR18934hmmpanther:PTHR18934:SF115HOGENOM:HOG000247063InParanoid:F4IDQ6InterPro:IPR001374
InterPro:IPR001650InterPro:IPR007502InterPro:IPR011545InterPro:IPR011709InterPro:IPR014001InterPro:IPR020683InterPro:IPR027417
iPTMnet:F4IDQ6KEGG:ath:AT1G06670OMA:LDLGNMEPaxDb:F4IDQ6Pfam:PF00270Pfam:PF00271Pfam:PF01424
Pfam:PF04408Pfam:PF07717Pfscan:PS50297Pfscan:PS51061Pfscan:PS51192Pfscan:PS51194PIR:E86201
PRIDE:F4IDQ6PROSITE:PS51061PROSITE:PS51192PROSITE:PS51194ProteinModelPortal:F4IDQ6Proteomes:UP000006548RefSeq:NP_172152.1
SMART:SM00393SMART:SM00487SMART:SM00490SMART:SM00847STRING:3702.AT1G06670.1SUPFAM:SSF48403SUPFAM:SSF52540
SUPFAM:SSF82708TAIR:AT1G06670tair10-symbols:NIHUniGene:At.20810UniProt:F4IDQ6
Coordinates (TAIR10) chr1:+:2040567..2047333
Molecular Weight (calculated) 174519.00 Da
IEP (calculated) 6.77
GRAVY (calculated) -0.57
Length 1576 amino acids
Sequence (TAIR10)
(BLAST)
0001: MAKKKKDTKH TRLCEATGAW ATKVLEDFRA SGNDSYVFEQ QLTNSERGII HQMCRTMGLR SKSNGSGEER RLSLFKGDGI SKSDKRRMYE ARNQKEKEGD
0101: GISKSYSKHR YETRFQKAGG IRKTRISPKK LKCVSFPPEA KAVLHDLFTR YPPCDGDTTG TSLGIYTTGN VNSNWKDDFF KKPHMTKHDI ENNVVSLSSR
0201: LKKERHFREI FEARSKLPIA SFRDAIISAV ESNQVVLIAG ETGCGKTTQV PQYLLDHMWH SKKEACKIIC TQPRRISAIS VSDRISWERG ETIGRTVGYK
0301: VRLQSEGGRE SSVVFCTNGI LLRVLIGKGV NSSVPDITHI IVDEIHERDS YSDFMLMILR DLLPSNPHLR LILMSATLDA ERFSEYFGGC PVVRVPGFTY
0401: PVRTFFLDDA LSVLNSDKNS HLLSAVKRDF KDEDKVSLDE AIDLAWTNDE FDCLVDLVSS EGSHEAYNYQ NSTTGLTPLM VFAGKGRVSD VCKLLSVGAD
0501: CTLKSKEGIT ALELAEKENQ FETAQIIREH AGNIQSNSQQ AQDLLDKYMA TIKPEEVDVG LIVKLMKKIC SDSKDGAILV FLPGWEEISK TKEKLLDDRF
0601: FAHSAKFIIL CLHSRVPAEE QKKVFNRPPR GCRKIVLATN IAESAVTIDD VVYVIDSGRM KEKSYDPYND VSTLQSSWVS KANAKQRAGR AGRCQAGICY
0701: HLYSKLRAAS LPEYRVPEVM RMPVDELCLQ VKMLDPNCNV NDFLQKLMDP PVAQSIENAL IILKDIGALT PEEELTELGQ KFGQLPVHPR ISKMIYFAIL
0801: VNCLDPALIL ACAADEKDPF TMPLSPGDRK KAAAAKHELA SLYGDHSDHL ATVAAFQCWK NAKASGQAKE FCSKYFISQV VMKRLDDLCR KLQGELNRHG
0901: VIPSSSSNCS LNAHDPGILR AVIAVGLYPM LGRMCPLSKN RTRSVIETIA GAKVRVPSLS NNVDMSSTKF DEALIVFDEI TRGDWGVVIR SCTVLPTIPV
1001: LLFSREIAVS TTESYDAVKS DDEEDHKVGN VGDAMDIDKE VGRPGEKIML GPENSVKVVV DRWLPFKVTA FEIAQMYILR ERLMASILFK VKHPKENLPP
1101: HLGASMYAIA SVLSYDSLAQ SSVQTVAVQP ITSVVDATSP RDDIPSTNPN ELREHDPNTT PMGSKLELAN KLGLGNMEES LPSNFADGNE QPDPNTSPVE
1201: DVSAATKQKK MQSESKRCKS LNNVDLGNIE ENFGNMEENP PSDLAIGNEQ TLPKLASNLD MGNMEENTPS DLANGNEKTE PNSANSMDLG NMEENTPSDL
1301: ANGNKKKEPK SVSKLDLGSE KVSIPSNLVN GNEQHDLNIA PGEDASAAKQ PEKKRSRSKK RKSGNNLDLG KMEKSKPSDL ANENEQTEPK SANNLDLGNM
1401: KENTPSDLAN ENEQTELRLP NNSDYGNMEE SLPLNLANGD EQPDPTTAPM EAAKQPKKKR SRSKKCKSVN NLDLGNMEEN KPSDLANGNE QKDPESVNRL
1501: DPGKEKESIP SNLVSGNEQP DSNTAPAKKP KKKKRKLANN FDSVNNMEEK MPSTNVLSQG NKSGLIEEKP SIPSDQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)