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AT1G06630.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.763
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : F-box/RNI-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
F-box/RNI-like superfamily protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT3G60040.1); Has 1823 Blast hits to 1784 proteins in 27 species: Archae - 2; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1819; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Protein Annotations
EMBL:CP002684EnsemblPlants:AT1G06630EnsemblPlants:AT1G06630.1entrez:837172ExpressionAtlas:F4IDP6Gene3D:3.80.10.10GeneID:837172
Gramene:AT1G06630.1hmmpanther:PTHR31639hmmpanther:PTHR31639:SF6InterPro:IPR001810InterPro:IPR032675OMA:ATPHTIAPaxDb:F4IDP6
Pfam:PF00646Pfscan:PS50181PRIDE:F4IDP6PROSITE:PS50181ProteinModelPortal:F4IDP6Proteomes:UP000006548RefSeq:NP_563769.4
SMART:SM00256SUPFAM:SSF52058SUPFAM:SSF81383TAIR:AT1G06630UniGene:At.42331UniProt:F4IDP6
Coordinates (TAIR10) chr1:+:2028071..2031173
Molecular Weight (calculated) 53177.50 Da
IEP (calculated) 5.14
GRAVY (calculated) -0.18
Length 477 amino acids
Sequence (TAIR10)
(BLAST)
001: MDAKKLDTGP RDAINWLPDE ILGKILSLLA TKQAVSTSVL SKKWRTLFKL VDTLEFDDSV SGMGEQEASY VFPESFKDLV DRTVALQCDY PIRKLSLKCH
101: VGRDDEQRKA CVGRWISNVV GRGVSEVVLR INDRGLHFLS PQLLTCKTLV KLTLGTRLFL GKLPSYVSLP SLKFLFIHSV FFDDFGELSN VLLAGCPVVE
201: ALYLNQNGES MPYTISSPTL KRLSVHYEYH FESVISFDLP NLEYLDYSDY ALYGYPQVNL ESLVEAYLNL DKAEHVESPD VTKLIMGIRN VEILSLSPDS
301: VGVIYSCCKY GLLLPVFNNL VSLSFGTKKT RAWKLLADIL KQSPKLETLI IEDLNGYPLD VSMPLNQVKE LQILEYGESD DERLQSRLES KNKLGSFDFE
401: KFLFPIPPPI KITVSPHPSD SGGDGSNSKS SSDDEFVSLD SSTSGLCSSS EHVRKKKMKR NNTEAEADAS SSDTSSG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)