AT1G06630.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.886 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : F-box/RNI-like superfamily protein | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
F-box/RNI-like superfamily protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT3G60040.1); Has 1823 Blast hits to 1784 proteins in 27 species: Archae - 2; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1819; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:2028071..2031173 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 53177.50 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 5.14 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.18 | ||||||||||||||||||||||||||||
| Length | 477 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDAKKLDTGP RDAINWLPDE ILGKILSLLA TKQAVSTSVL SKKWRTLFKL VDTLEFDDSV SGMGEQEASY VFPESFKDLV DRTVALQCDY PIRKLSLKCH 101: VGRDDEQRKA CVGRWISNVV GRGVSEVVLR INDRGLHFLS PQLLTCKTLV KLTLGTRLFL GKLPSYVSLP SLKFLFIHSV FFDDFGELSN VLLAGCPVVE 201: ALYLNQNGES MPYTISSPTL KRLSVHYEYH FESVISFDLP NLEYLDYSDY ALYGYPQVNL ESLVEAYLNL DKAEHVESPD VTKLIMGIRN VEILSLSPDS 301: VGVIYSCCKY GLLLPVFNNL VSLSFGTKKT RAWKLLADIL KQSPKLETLI IEDLNGYPLD VSMPLNQVKE LQILEYGESD DERLQSRLES KNKLGSFDFE 401: KFLFPIPPPI KITVSPHPSD SGGDGSNSKS SSDDEFVSLD SSTSGLCSSS EHVRKKKMKR NNTEAEADAS SSDTSSG |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)