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AT1G06570.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : phytoene desaturation 1
Curator
Summary (TAIR10)
Mutation of the PDS1 locus disrupts the activity of p-hydroxyphenylpyruvate dioxygenase (HPPDase), the first committed step in the synthesis of both plastoquinone and tocopherols in plants.
Computational
Description (TAIR10)
phytoene desaturation 1 (PDS1); CONTAINS InterPro DOMAIN/s: 4-hydroxyphenylpyruvate dioxygenase (InterPro:IPR005956), Glyoxalase/bleomycin resistance protein/dioxygenase (InterPro:IPR004360); Has 2414 Blast hits to 2412 proteins in 817 species: Archae - 3; Bacteria - 1671; Metazoa - 206; Fungi - 158; Plants - 88; Viruses - 0; Other Eukaryotes - 288 (source: NCBI BLink).
Protein Annotations
eggNOG:COG3185eggNOG:KOG0638EMBL:AY136294EnsemblPlants:AT1G06570EnsemblPlants:AT1G06570.1entrez:837168ExpressionAtlas:Q8L7E8
Gene3D:3.10.180.10GO:GO:0003868GO:GO:0009072gramene_plant_reactome:1119287gramene_plant_reactome:6874860hmmpanther:PTHR11959hmmpanther:PTHR11959:SF1
HOGENOM:HOG000188687InterPro:IPR004360InterPro:IPR005956InterPro:IPR029068PANTHER:PTHR11959PaxDb:Q8L7E8Pfam:P93836
Pfam:PF00903PRIDE:Q8L7E8ProteinModelPortal:Q8L7E8STRING:3702.AT1G06570.1SUPFAM:SSF54593tair10-symbols:HPDtair10-symbols:PDS1
TIGRfam:TIGR01263TIGRFAMs:TIGR01263UniProt:O82449UniProt:P93836UniProt:Q8L7E8
Coordinates (TAIR10) chr1:-:2012015..2013543
Molecular Weight (calculated) 51923.50 Da
IEP (calculated) 5.96
GRAVY (calculated) -0.25
Length 473 amino acids
Sequence (TAIR10)
(BLAST)
001: MCLSLASTAQ RNTQFRSRVL VLAELVKSMG HQNAAVSENQ NHDDGAASSP GFKLVGFSKF VRKNPKSDKF KVKRFHHIEF WCGDATNVAR RFSWGLGMRF
101: SAKSDLSTGN MVHASYLLTS GDLRFLFTAP YSPSLSAGEI KPTTTASIPS FDHGSCRSFF SSHGLGVRAV AIEVEDAESA FSISVANGAI PSSPPIVLNE
201: AVTIAEVKLY GDVVLRYVSY KAEDTEKSEF LPGFERVEDA SSFPLDYGIR RLDHAVGNVP ELGPALTYVA GFTGFHQFAE FTADDVGTAE SGLNSAVLAS
301: NDEMVLLPIN EPVHGTKRKS QIQTYLEHNE GAGLQHLALM SEDIFRTLRE MRKRSSIGGF DFMPSPPPTY YQNLKKRVGD VLSDDQIKEC EELGILVDRD
401: DQGTLLQIFT KPLGDRPTIF IEIIQRVGCM MKDEEGKAYQ SGGCGGFGKG NFSELFKSIE EYEKTLEAKQ LVG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)