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AT1G06530.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31975158 (2020): plastid
  • PMID:31871212 (2020): mitochondrion
  • PMID:31818904 (2020): mitochondrion
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31520498 (2020): mitochondrion
  • PMID:31023727 (2019): mitochondrion
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:27943495 (2017): mitochondrion
  • PMID:27122571 (2016): mitochondrion
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:22923678 (2012): mitochondrion
  • PMID:22574745 (2012): mitochondrion
  • PMID:22550958 (2012): plastid
  • PMID:21896887 (2011): mitochondrion mitochondrial envelope mitochondrial outer membrane
  • PMID:21841088 (2011): mitochondrion
  • PMID:21472856 (2011): mitochondrion
  • PMID:19334764 (2009): plasma membrane
  • PMID:17151019 (2007): plant-type vacuole
  • PMID:16618929 (2006): unclear
  • PMID:14671022 (2004): mitochondrion
  • PMID:11743115 (2001): mitochondrion
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : Tropomyosin-related
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Tropomyosin-related; LOCATED IN: mitochondrion, plasma membrane, plastid; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: Tropomyosin-related (TAIR:AT3G58840.2); Has 146608 Blast hits to 68961 proteins in 3334 species: Archae - 2609; Bacteria - 25073; Metazoa - 65463; Fungi - 13367; Plants - 8726; Viruses - 553; Other Eukaryotes - 30817 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J0S8eggNOG:ENOG410ZPUSEMBL:AC007592EMBL:CP002684
EMBL:DQ785480EnsemblPlants:AT1G06530EnsemblPlants:AT1G06530.1entrez:837164
GeneID:837164Genevisible:Q9SHJ6GO:GO:0005739GO:GO:0005774
GO:GO:0007005GO:GO:0009536GO:GO:0031307Gramene:AT1G06530.1
hmmpanther:PTHR18937hmmpanther:PTHR18937:SF242HOGENOM:HOG000090641iPTMnet:Q9SHJ6
KEGG:ath:AT1G06530ncoils:CoilOMA:CEKSWSKPaxDb:Q9SHJ6
Pfam:Q9SHJ6PhylomeDB:Q9SHJ6PRO:PR:Q9SHJ6ProteinModelPortal:Q9SHJ6
Proteomes:UP000006548RefSeq:NP_172140.1SMR:Q9SHJ6STRING:3702.AT1G06530.1
SUPFAM:SSF57997TAIR:AT1G06530TMHMM:TMhelixUniGene:At.42336
UniProt:Q9SHJ6
Coordinates (TAIR10) chr1:+:2001625..2002596
Molecular Weight (calculated) 36121.30 Da
IEP (calculated) 4.46
GRAVY (calculated) -0.84
Length 323 amino acids
Sequence (TAIR10)
(BLAST)
001: MAEERSLNGE ATGQDDESFF DSDQQGDDGK STELNQKIGD LESQNQELAR DNDAINRKIE SLTAEIEELR GAESKAKRKM GEMEREIDKS DEERKVLEAI
101: ASRASELETE VARLQHELIT ARTEGEEATA EAEKLRSEIS QKGGGIEELE KEVAGLRTVK EENEKRMKEL ESKLGALEVK ELDEKNKKFR AEEEMREKID
201: NKEKEVHDLK EKIKSLESDV AKGKTELQKW ITEKMVVEDS LKDSEKKVVA LESEIVELQK QLDDAEKMIN GLKNVVEEPL NGIEFKSWSP NVTAVGSGGA
301: VAAVAVAVAG AAVVCYIYHS RRV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)