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AT1G06450.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.899
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Polynucleotidyl transferase, ribonuclease H-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Polynucleotidyl transferase, ribonuclease H-like superfamily protein; FUNCTIONS IN: ribonuclease activity, nucleic acid binding; INVOLVED IN: RNA modification; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribonuclease CAF1 (InterPro:IPR006941), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337); BEST Arabidopsis thaliana protein match is: Polynucleotidyl transferase, ribonuclease H-like superfamily protein (TAIR:AT3G44240.1); Has 884 Blast hits to 883 proteins in 223 species: Archae - 0; Bacteria - 0; Metazoa - 252; Fungi - 148; Plants - 363; Viruses - 0; Other Eukaryotes - 121 (source: NCBI BLink).
Protein Annotations
BioGrid:22398DNASU:837157EC:3.1.13.4eggNOG:COG5228eggNOG:KOG0304EMBL:AC007592EMBL:AK118108
EMBL:BT005529EMBL:CP002684EnsemblPlants:AT1G06450EnsemblPlants:AT1G06450.1entrez:837157Gene3D:3.30.420.10GeneID:837157
Genevisible:Q9SHJ0GO:GO:0003723GO:GO:0004535GO:GO:0005634GO:GO:0005737GO:GO:0006351GO:GO:0006355
GO:GO:0046872Gramene:AT1G06450.1hmmpanther:PTHR10797hmmpanther:PTHR10797:SF0HOGENOM:HOG000173077InParanoid:Q9SHJ0IntAct:Q9SHJ0
InterPro:IPR006941InterPro:IPR012337KEGG:ath:AT1G06450KO:K12581OMA:IAFDTEYPaxDb:Q9SHJ0Pfam:PF04857
Pfam:Q9SHJ0PhylomeDB:Q9SHJ0PIR:D86200PRO:PR:Q9SHJ0ProteinModelPortal:Q9SHJ0Proteomes:UP000006548RefSeq:NP_172133.1
SMR:Q9SHJ0STRING:3702.AT1G06450.1SUPFAM:SSF53098TAIR:AT1G06450UniGene:At.24926UniGene:At.66805UniProt:Q9SHJ0
Coordinates (TAIR10) chr1:+:1965924..1967006
Molecular Weight (calculated) 40480.20 Da
IEP (calculated) 6.28
GRAVY (calculated) -0.18
Length 360 amino acids
Sequence (TAIR10)
(BLAST)
001: MNEIHQPLAR RVWRSNVDEE MARMAECLKR FPLIAFDTEY PGIIFRTYFD SSSDECYRAM KGNVENTKLI QCGFTLFNAK GEIGGVWEIN FSNFGDPSDT
101: RNELSIEFLR RHGLDLQKIR DEGVDMFGYG FFPKLMTVFR SQKHVEFVTF QGAYDFAYFL SILNHGKLPE THGEFATEVV KVFGQVYDTK VMAGFCEGLG
201: EHLGLSKLAQ LLQITRVGRA HHAGSDSLMT ALVFIKLKHV YEDSRFARGL IYGIGKSNLV AAPAPAPVPE PTLPLMCQQN VASYPVFHNG YVQNYEQPQL
301: VSYDPSGAPW AFCNATGTYV QLTHLPASTF AYPSQTPSAT VDYLGPVPNY YNNNACYVVE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)