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AT1G06270.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:21908688 (2011): endoplasmic reticulum
  • PMID:21908688 (2011): plastid plastid envelope
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Pentatricopeptide repeat (PPR) superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: rna processing factor 2 (TAIR:AT1G62670.1); Has 12812 Blast hits to 4675 proteins in 155 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 63; Plants - 12587; Viruses - 0; Other Eukaryotes - 162 (source: NCBI BLink).
Protein Annotations
BioGrid:22379eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:AC025290EMBL:AY065382EMBL:AY084351EMBL:AY096546
EMBL:CP002684EnsemblPlants:AT1G06270EnsemblPlants:AT1G06270.1entrez:837138GeneID:837138Genevisible:Q9LNC0GO:GO:0042170
Gramene:AT1G06270.1hmmpanther:PTHR24015HOGENOM:HOG000005991InParanoid:Q9LNC0IntAct:Q9LNC0InterPro:IPR002885KEGG:ath:AT1G06270
OMA:FIPYIKVPaxDb:Q9LNC0Pfam:PF13041Pfam:Q9LNC0Pfscan:PS51375PhylomeDB:Q9LNC0PIR:E86198
PRIDE:Q9LNC0PRO:PR:Q9LNC0PROSITE:PS51375ProteinModelPortal:Q9LNC0Proteomes:UP000006548RefSeq:NP_563765.1SMR:Q9LNC0
STRING:3702.AT1G06270.1TAIR:AT1G06270TIGRfam:TIGR00756TIGRFAMs:TIGR00756UniGene:At.28507UniProt:Q9LNC0
Coordinates (TAIR10) chr1:-:1918242..1919273
Molecular Weight (calculated) 38935.80 Da
IEP (calculated) 8.93
GRAVY (calculated) 0.04
Length 343 amino acids
Sequence (TAIR10)
(BLAST)
001: MAIRLTHLRK PLAYSRSFDV CIPFFRSISS FEAVEKAIKC AVETKEYLRI PELVVSLKEP YQNSTLFSFL SAFQRHHRIR VIDEILQSFV PVRPRSLPKI
101: VYSSLLTYCL QSSDPLPLSF AILQRTLRSG CLPNPQTHLL LSDAWLERRR GSQSVADIIN EMKLIGYSPD TGTCNYLVSS LCAVDKLDEA IKVVEEMSAA
201: GCIPDVESYG AVINSLCLAR KTTDVVKIVK EMVSKAGISP RKGMLTKVAA ALRANREIWK AIEMIEFVES RDYPVEFESY EVVVEGCLEV REYILAGKVV
301: MRMTDRGFIP YIKVRQKVVE RLINIGEWKL ACTVRQRVSE LRS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)