AT1G06210.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : ENTH/VHS/GAT family protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
ENTH/VHS/GAT family protein; FUNCTIONS IN: protein transporter activity; INVOLVED IN: intracellular protein transport, intra-Golgi vesicle-mediated transport; LOCATED IN: Golgi stack, intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: VHS (InterPro:IPR002014), GAT (InterPro:IPR004152), ENTH/VHS (InterPro:IPR008942); BEST Arabidopsis thaliana protein match is: Target of Myb protein 1 (TAIR:AT5G16880.2); Has 1326 Blast hits to 1324 proteins in 178 species: Archae - 0; Bacteria - 6; Metazoa - 730; Fungi - 235; Plants - 256; Viruses - 0; Other Eukaryotes - 99 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:1897567..1898986 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 42799.30 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.43 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.79 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 383 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDKLKIAEWG EKLKTGGAQM SRMVSEKVKD MLQAPTLESK MVDEATLETL EEPNWGMNMR ICAQINNDEF NGTEIVRAIK RKISGKSPVS QRLSLELLEA 101: CAMNCEKVFS EVASEKVLDE MVWLIKNGEA DSENRKRAFQ LIRAWGQSQD LTYLPVFHQT YMSLEGENGL HARGEENSMP GQSSLESLMQ RPVPVPPPGS 201: YPVPNQEQAL GDDDGLDYNF GNLSIKDKKE QIEITRNSLE LLSSMLNTEG KPNHTEDDLT VSLMEKCKQS QPLIQMIIES TTDDEGVLFE ALHLNDELQQ 301: VLSSYKKPDE TEKKASIVEQ ESSGSKDTGP KPTEQEEQEP VKKTGADDDK KHSEASGSSN KTVKEEKQAV KIELGLSSDE DEK |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)