AT1G06190.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Rho termination factor | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Rho termination factor; FUNCTIONS IN: transcription termination factor activity, ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism, ATP binding; INVOLVED IN: transcription termination, ATP biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rho termination factor, N-terminal (InterPro:IPR011112), ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter (InterPro:IPR001757); BEST Arabidopsis thaliana protein match is: ATP binding;ATPases, coupled to transmembrane movement of ions, phosphorylative mechanism (TAIR:AT2G31150.1); Has 1888 Blast hits to 1636 proteins in 313 species: Archae - 6; Bacteria - 275; Metazoa - 547; Fungi - 247; Plants - 133; Viruses - 50; Other Eukaryotes - 630 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:1892467..1894078 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 44531.90 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.81 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.98 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 401 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAMSGTFHLT SDYVPGYTLS DSRCFFNSAV SRRTLAILPC SSCLDHKNGR LKSVPNRSSF VCRASSGGYR RNPDFSRLNK HGYRGNNRQS GGREDFDIEN 101: SDMLSSRNGP LFNLSSSPKF QATSSPGPRE KEIVELFRKV QAQLRARAAA KKEEKKIEEA SKGQGKESET VDSLLKLLRK HSGEQSKRQV SKFSSQGEVQ 201: GDTVDKQDRT GNLVTSGNKD NNASSFTRPT SSFRRKSPVP RSQSPPAYSS EATFDQSSSY SVTWTQKKDT VELHDEPEHE PAYEHEHEPE NESEPGPVTT 301: MLEPDSELKP ESSSFYQEEE DDDVTFDVLS QDDGILDVLS DDDESLDDAD EDSDEAEEEA VKDLSELKLV ELRGIAKSRG LKGLSKMKKA ELVELLGSDS 401: S |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)