suba logo
AT1G06070.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Basic-leucine zipper (bZIP) transcription factor family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Basic-leucine zipper (bZIP) transcription factor family protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), bZIP transcription factor, bZIP-1 (InterPro:IPR011616); BEST Arabidopsis thaliana protein match is: Basic-leucine zipper (bZIP) transcription factor family protein (TAIR:AT2G31370.5); Has 39307 Blast hits to 17494 proteins in 873 species: Archae - 8; Bacteria - 1528; Metazoa - 14762; Fungi - 4294; Plants - 2852; Viruses - 384; Other Eukaryotes - 15479 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IIHMeggNOG:ENOG4111FX9EMBL:AC024174EMBL:AJ419854
EMBL:AK229666EMBL:BT028965EMBL:CP002684EnsemblPlants:AT1G06070
EnsemblPlants:AT1G06070.1entrez:837116GeneID:837116GO:GO:0003700
GO:GO:0005634GO:GO:0043565Gramene:AT1G06070.1hmmpanther:PTHR13690
hmmpanther:PTHR13690:SF80IntAct:Q9LNE0InterPro:IPR004827KEGG:ath:AT1G06070
ncoils:CoilOMA:MSAESSHPfam:PF00170Pfscan:PS50217
PhylomeDB:Q9LNE0PIR:H86195PROSITE:PS50217Proteomes:UP000006548
RefSeq:NP_172097.1SMART:SM00338SMR:Q9LNE0STRING:3702.AT1G06070.1
SUPFAM:SSF57959TAIR:AT1G06070UniGene:At.42357UniGene:At.70161
UniProt:Q9LNE0
Coordinates (TAIR10) chr1:-:1835201..1837116
Molecular Weight (calculated) 47133.60 Da
IEP (calculated) 6.36
GRAVY (calculated) -1.01
Length 423 amino acids
Sequence (TAIR10)
(BLAST)
001: MDKEKSPAPP PSGGLPPPSG RYSAFSPNGS SFAMKAESSF PPLTPSGSNS SDANRFSHDI SRMPDNPPKN LGHRRAHSEI LTLPDDLSFD SDLGVVGAAD
101: GPSFSDDTDE DLLYMYLDME KFNSSATSTS QMGEPSEPTW RNELASTSNL QSTPGSSSER PRIRHQHSQS MDGSTTIKPE MLMSGNEDVS GVDSKKAISA
201: AKLSELALID PKRAKRIWAN RQSAARSKER KMRYIAELER KVQTLQTEAT SLSAQLTLLQ RDTNGLGVEN NELKLRVQTM EQQVHLQDAL NDALKEEVQH
301: LKVLTGQGPS NGTSMNYGSF GSNQQFYPNN QSMHTILAAQ QLQQLQIQSQ KQQQQQQQHQ QQQQQQQQQF HFQQQQLYQL QQQQRLQQQE QQSGASELRR
401: PMPSPGQKES VTSPDRETPL TKD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)