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AT1G06000.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.644
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : UDP-Glycosyltransferase superfamily protein
Curator
Summary (TAIR10)
encodes a flavonol-7-O-rhamnosyltransferase involved in the formation of rhamnosylated flavonols
Computational
Description (TAIR10)
UDP-Glycosyltransferase superfamily protein; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: UDP-glucosyl transferase 89B1 (TAIR:AT1G73880.1); Has 5632 Blast hits to 5556 proteins in 323 species: Archae - 0; Bacteria - 151; Metazoa - 482; Fungi - 23; Plants - 4909; Viruses - 43; Other Eukaryotes - 24 (source: NCBI BLink).
Protein Annotations
eggNOG:COG1819eggNOG:KOG1192EMBL:KJ139027EnsemblPlants:AT1G06000EnsemblPlants:AT1G06000.1entrez:837109ExpressionAtlas:W8PVE7
GeneID:837109GO:GO:0016758Gramene:AT1G06000.1gramene_pathway:2.4.1.-gramene_pathway:PWY-5320gramene_pathway:PWY-5321hmmpanther:PTHR11926
hmmpanther:PTHR11926:SF282InterPro:IPR002213KEGG:ath:AT1G06000OMA:VGSYLTHPANTHER:PTHR11926PaxDb:W8PVE7Pfam:PF00201
Pfam:Q9LNE6PhylomeDB:W8PVE7ProteinModelPortal:W8PVE7RefSeq:NP_563756.1SMR:W8PVE7STRING:3702.AT1G06000.1SUPFAM:SSF53756
UniGene:At.28159UniProt:Q9LNE6UniProt:W8PVE7
Coordinates (TAIR10) chr1:-:1820495..1821802
Molecular Weight (calculated) 48124.90 Da
IEP (calculated) 6.12
GRAVY (calculated) -0.03
Length 435 amino acids
Sequence (TAIR10)
(BLAST)
001: MTTTTTKKPH VLVIPFPQSG HMVPHLDLTH QILLRGATVT VLVTPKNSSY LDALRSLHSP EHFKTLILPF PSHPCIPSGV ESLQQLPLEA IVHMFDALSR
101: LHDPLVDFLS RQPPSDLPDA ILGSSFLSPW INKVADAFSI KSISFLPINA HSISVMWAQE DRSFFNDLET ATTESYGLVI NSFYDLEPEF VETVKTRFLN
201: HHRIWTVGPL LPFKAGVDRG GQSSIPPAKV SAWLDSCPED NSVVYVGFGS QIRLTAEQTA ALAAALEKSS VRFIWAVRDA AKKVNSSDNS VEEDVIPAGF
301: EERVKEKGLV IRGWAPQTMI LEHRAVGSYL THLGWGSVLE GMVGGVMLLA WPMQADHFFN TTLIVDKLRA AVRVGENRDS VPDSDKLARI LAESAREDLP
401: ERVTLMKLRE KAMEAIKEGG SSYKNLDELV AEMCL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)