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AT1G05960.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 1.000
ASURE: plasma membrane
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : ARM repeat superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
ARM repeat superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: Uncharacterized protein (TAIR:AT2G41830.1); Has 401 Blast hits to 394 proteins in 143 species: Archae - 0; Bacteria - 6; Metazoa - 142; Fungi - 117; Plants - 127; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410YJSKeggNOG:KOG1877EMBL:CP002684EnsemblPlants:AT1G05960EnsemblPlants:AT1G05960.1entrez:837106ExpressionAtlas:F4IAF5
GeneID:837106Gramene:AT1G05960.1hmmpanther:PTHR12444hmmpanther:PTHR12444:SF2InterPro:IPR016024ncoils:CoilPaxDb:F4IAF5
PRIDE:F4IAF5ProteinModelPortal:F4IAF5Proteomes:UP000006548RefSeq:NP_563755.1STRING:3702.AT1G05960.2SUPFAM:SSF48371TAIR:AT1G05960
UniGene:At.15457UniGene:At.67052UniProt:F4IAF5
Coordinates (TAIR10) chr1:-:1808478..1815060
Molecular Weight (calculated) 108952.00 Da
IEP (calculated) 5.57
GRAVY (calculated) -0.20
Length 982 amino acids
Sequence (TAIR10)
(BLAST)
001: MGVMSRRVLP ACGNLCFFCP SLRARSRHPV KRYKKMLAEI FPRNQEAEPN DRKIGKLCEY ASRNPLRIPK ITEYLEQKCY KELRNGNIGS VKVVLCIYKK
101: LLSSCKEQMP LFSCSLLSIV RTLLEQTKEE EVQILGCNTL VDFISLQTVN SHMFNLEGLI PKLCQLAQEM GDDERSLQLR SAGMQALAFM VSFIGEHSQL
201: SMDLDMIISV ILENYMDLEK GQEDTKEVDQ ISDTKIPNMT KKVSFKPNPV TDYKLENMDI SKSPSYWSMV CLCNIAKLAK ETTTVRRVLE PLLTAFDSGD
301: YWSPQKGVAS SVLLFLQSRL EESGENCHVL VSSLIKHLDH KNVIKQQGLQ INMVNVATCL ALHAKQQASG AMTAVIADLI KHLRKCLQNA AESDVSVDKT
401: KQNSDLQHAL ENCIAELSNK VGDAGPILDM FAVVLETIST NVVLSRTTAS AILRAAHIVS VVPNVSYHKK VFPDALFHQL LLAMSHADCT TRVEAHNIFS
501: VVLLGTLRLP WSDQHKETSE AVSGSLSVDG ICTVRNQEEE KEKVEKSLNS ELCKDVNHIS RPSVSGQTSQ QLSCQSLDSL KDLDDGIKSL CSLRLSSHQV
601: NMLLSSLWIQ ATSTDNTPEN FEAMASTYQI TLLFSLAKRS NHMALVQCFQ LAFSLRNLSL NQDGGMQHSR RRSIFTFASY MLIFGAKISN ILELVPIIKE
701: SLTAQMVDPY LVLEGDIRLR AVCSGFPQEE TYGSDKDDSA ALNSSVIVTD DRRLKEIVIT HFTSKLQTLS EEEQLNLRKE IQSDFSLDDA HSLGGQLFTD
801: TPGPSSPLNQ TELPAFEEVE LSDIAAFEGI SPGASGSQSG HRTSLSTNTN PVDVLSVNEL LESVSETARQ VASLPVSSIP VPYDQMMNQC EALVTGKQQK
901: MSVLRSFKPQ ATKAITSEDN EKDEQYLLKE TEEAGEDDEK AIIVADVQPQ GQLGFFSQEV PQNSFRLPPS SPYDKFLKAA GC
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)