AT1G05960.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 1.000 ASURE: plasma membrane What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : ARM repeat superfamily protein | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
ARM repeat superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: Uncharacterized protein (TAIR:AT2G41830.1); Has 401 Blast hits to 394 proteins in 143 species: Archae - 0; Bacteria - 6; Metazoa - 142; Fungi - 117; Plants - 127; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:1808478..1815060 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 108952.00 Da | ||||||||||||||||||||||||
| IEP (calculated) | 5.57 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.20 | ||||||||||||||||||||||||
| Length | 982 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGVMSRRVLP ACGNLCFFCP SLRARSRHPV KRYKKMLAEI FPRNQEAEPN DRKIGKLCEY ASRNPLRIPK ITEYLEQKCY KELRNGNIGS VKVVLCIYKK 101: LLSSCKEQMP LFSCSLLSIV RTLLEQTKEE EVQILGCNTL VDFISLQTVN SHMFNLEGLI PKLCQLAQEM GDDERSLQLR SAGMQALAFM VSFIGEHSQL 201: SMDLDMIISV ILENYMDLEK GQEDTKEVDQ ISDTKIPNMT KKVSFKPNPV TDYKLENMDI SKSPSYWSMV CLCNIAKLAK ETTTVRRVLE PLLTAFDSGD 301: YWSPQKGVAS SVLLFLQSRL EESGENCHVL VSSLIKHLDH KNVIKQQGLQ INMVNVATCL ALHAKQQASG AMTAVIADLI KHLRKCLQNA AESDVSVDKT 401: KQNSDLQHAL ENCIAELSNK VGDAGPILDM FAVVLETIST NVVLSRTTAS AILRAAHIVS VVPNVSYHKK VFPDALFHQL LLAMSHADCT TRVEAHNIFS 501: VVLLGTLRLP WSDQHKETSE AVSGSLSVDG ICTVRNQEEE KEKVEKSLNS ELCKDVNHIS RPSVSGQTSQ QLSCQSLDSL KDLDDGIKSL CSLRLSSHQV 601: NMLLSSLWIQ ATSTDNTPEN FEAMASTYQI TLLFSLAKRS NHMALVQCFQ LAFSLRNLSL NQDGGMQHSR RRSIFTFASY MLIFGAKISN ILELVPIIKE 701: SLTAQMVDPY LVLEGDIRLR AVCSGFPQEE TYGSDKDDSA ALNSSVIVTD DRRLKEIVIT HFTSKLQTLS EEEQLNLRKE IQSDFSLDDA HSLGGQLFTD 801: TPGPSSPLNQ TELPAFEEVE LSDIAAFEGI SPGASGSQSG HRTSLSTNTN PVDVLSVNEL LESVSETARQ VASLPVSSIP VPYDQMMNQC EALVTGKQQK 901: MSVLRSFKPQ ATKAITSEDN EKDEQYLLKE TEEAGEDDEK AIIVADVQPQ GQLGFFSQEV PQNSFRLPPS SPYDKFLKAA GC |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)