(Prediction and Experimental)
What is SUBAcon?
What is ASURE?
|Experimental Localisations and PPI||
|Description (TAIR10)||protein_coding : Chitinase family protein|
|Encodes an endo chitinase-like protein AtCTL1. Essential for tolerance to heat, salt and drought stresses. Also involved in root hair development, cell expansion and response to cytokinin. Allelic to erh2. 11 alleles described in Hauser (1995). Mutant is defective in acquired thermotolerance, appears semidwarf throughout its life cycle and has extra lateral branches. There are two EMS alleles. Expression of AtHSP101 is not affected in the mutants.|
|POM-POM1 (POM1); FUNCTIONS IN: chitinase activity; INVOLVED IN: in 9 processes; LOCATED IN: endomembrane system; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 19 (InterPro:IPR016283), Glycoside hydrolase, family 19, catalytic (InterPro:IPR000726); BEST Arabidopsis thaliana protein match is: chitinase-like protein 2 (TAIR:AT3G16920.1); Has 1965 Blast hits to 1960 proteins in 417 species: Archae - 0; Bacteria - 470; Metazoa - 35; Fungi - 5; Plants - 1415; Viruses - 0; Other Eukaryotes - 40 (source: NCBI BLink).|
|Molecular Weight (calculated)||35581.30 Da|
|Length||321 amino acids|
001: MVTIRSGSIV ILVLLAVSFL ALVANGEDKT IKVKKVRGNK VCTQGWECSW WSKYCCNQTI SDYFQVYQFE QLFSKRNTPI AHAVGFWDYQ SFITAAALFE
101: PLGFGTTGGK LMGQKEMAAF LGHVASKTSC GYGVATGGPL AWGLCYNREM SPMQSYCDES WKFKYPCSPG AEYYGRGALP IYWNFNYGAA GEALKADLLN
201: HPEYIEQNAT LAFQAAIWRW MTPIKRAQPS AHDIFVGNWK PTKNDTLSKR GPTFGSTMNV LYGEYTCGQG SIDPMNNIIS HYLYFLDLMG IGREDAGPND
301: ELSCAEQKPF NPSTVPSSSS S
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)