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AT1G05850.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
extracellular 0.998
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Chitinase family protein
Curator
Summary (TAIR10)
Encodes an endo chitinase-like protein AtCTL1. Essential for tolerance to heat, salt and drought stresses. Also involved in root hair development, cell expansion and response to cytokinin. Allelic to erh2. 11 alleles described in Hauser (1995). Mutant is defective in acquired thermotolerance, appears semidwarf throughout its life cycle and has extra lateral branches. There are two EMS alleles. Expression of AtHSP101 is not affected in the mutants.
Computational
Description (TAIR10)
POM-POM1 (POM1); FUNCTIONS IN: chitinase activity; INVOLVED IN: in 9 processes; LOCATED IN: endomembrane system; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 19 (InterPro:IPR016283), Glycoside hydrolase, family 19, catalytic (InterPro:IPR000726); BEST Arabidopsis thaliana protein match is: chitinase-like protein 2 (TAIR:AT3G16920.1); Has 1965 Blast hits to 1960 proteins in 417 species: Archae - 0; Bacteria - 470; Metazoa - 35; Fungi - 5; Plants - 1415; Viruses - 0; Other Eukaryotes - 40 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G05850-MONOMERCAZy:GH19eggNOG:COG3979eggNOG:KOG4742EMBL:AB493435EMBL:AC009999EMBL:AF332458
EMBL:AF422178EMBL:AF422179EMBL:AY034935EMBL:AY113925EMBL:CP002684EMBL:Z25683EnsemblPlants:AT1G05850
EnsemblPlants:AT1G05850.1entrez:837095GeneID:837095Genevisible:Q9MA41GO:GO:0005794GO:GO:0006032GO:GO:0009408
GO:GO:0009414GO:GO:0009651GO:GO:0009735GO:GO:0009825GO:GO:0009873GO:GO:0010053GO:GO:0010167
GO:GO:0010337GO:GO:0016998GO:GO:0030244GO:GO:0030247GO:GO:0048046Gramene:AT1G05850.1hmmpanther:PTHR22595
hmmpanther:PTHR22595:SF42HOGENOM:HOG000231411InParanoid:Q9MA41InterPro:IPR000726InterPro:IPR016283InterPro:IPR023346KEGG:00520+3.2.1.14
KEGG:ath:AT1G05850OMA:ESICGKGPaxDb:Q9MA41Pfam:PF00182Pfam:Q9MA41PhylomeDB:Q9MA41PIR:C86193
PIRSF:PIRSF001060PRIDE:Q9MA41PRO:PR:Q9MA41ProteinModelPortal:Q9MA41Proteomes:UP000006548RefSeq:NP_172076.1SMR:Q9MA41
STRING:3702.AT1G05850.1SUPFAM:SSF53955TAIR:AT1G05850tair10-symbols:ATCTL1tair10-symbols:CTL1tair10-symbols:ELPtair10-symbols:ELP1
tair10-symbols:ERH2tair10-symbols:HOT2tair10-symbols:POM1TMHMM:TMhelixUniGene:At.24593UniProt:Q9MA41
Coordinates (TAIR10) chr1:-:1766833..1768117
Molecular Weight (calculated) 35581.30 Da
IEP (calculated) 7.63
GRAVY (calculated) -0.20
Length 321 amino acids
Sequence (TAIR10)
(BLAST)
001: MVTIRSGSIV ILVLLAVSFL ALVANGEDKT IKVKKVRGNK VCTQGWECSW WSKYCCNQTI SDYFQVYQFE QLFSKRNTPI AHAVGFWDYQ SFITAAALFE
101: PLGFGTTGGK LMGQKEMAAF LGHVASKTSC GYGVATGGPL AWGLCYNREM SPMQSYCDES WKFKYPCSPG AEYYGRGALP IYWNFNYGAA GEALKADLLN
201: HPEYIEQNAT LAFQAAIWRW MTPIKRAQPS AHDIFVGNWK PTKNDTLSKR GPTFGSTMNV LYGEYTCGQG SIDPMNNIIS HYLYFLDLMG IGREDAGPND
301: ELSCAEQKPF NPSTVPSSSS S
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)