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AT1G05840.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Eukaryotic aspartyl protease family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Eukaryotic aspartyl protease family protein; FUNCTIONS IN: aspartic-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: anchored to membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase aspartic, catalytic (InterPro:IPR009007), Peptidase aspartic (InterPro:IPR021109), Peptidase A1 (InterPro:IPR001461); BEST Arabidopsis thaliana protein match is: Eukaryotic aspartyl protease family protein (TAIR:AT3G02740.1); Has 3016 Blast hits to 2994 proteins in 298 species: Archae - 0; Bacteria - 0; Metazoa - 466; Fungi - 565; Plants - 1776; Viruses - 0; Other Eukaryotes - 209 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XNV7eggNOG:KOG1339EMBL:CP002684EnsemblPlants:AT1G05840EnsemblPlants:AT1G05840.1entrez:837094Gene3D:2.40.70.10
GeneID:837094GO:GO:0004190GO:GO:0031225Gramene:AT1G05840.1hmmpanther:PTHR13683hmmpanther:PTHR13683:SF288InParanoid:F4IAD5
InterPro:IPR001461InterPro:IPR021109InterPro:IPR032799InterPro:IPR032861InterPro:IPR033121KEGG:ath:AT1G05840MEROPS:A01.A34
OMA:HEYLFPFPANTHER:PTHR13683PaxDb:F4IAD5Pfam:PF14541Pfam:PF14543Pfscan:PS51767PRIDE:F4IAD5
PRINTS:PR00792PROSITE:PS51767ProteinModelPortal:F4IAD5Proteomes:UP000006548RefSeq:NP_563751.1SMR:F4IAD5STRING:3702.AT1G05840.1
SUPFAM:SSF50630TAIR:AT1G05840UniGene:At.26529UniGene:At.27869UniGene:At.67200UniProt:F4IAD5
Coordinates (TAIR10) chr1:-:1762843..1766150
Molecular Weight (calculated) 53300.10 Da
IEP (calculated) 6.05
GRAVY (calculated) 0.00
Length 485 amino acids
Sequence (TAIR10)
(BLAST)
001: MTLSIVSFPI CGRFTLIWFL TALVSVSCNP GVFNVKYRYP RLQGSLTALK EHDDRRQLTI LAGIDLPLGG TGRPDIPGLY YAKIGIGTPA KSYYVQVDTG
101: SDIMWVNCIQ CKQCPRRSTL GIELTLYNID ESDSGKLVSC DDDFCYQISG GPLSGCKANM SCPYLEIYGD GSSTAGYFVK DVVQYDSVAG DLKTQTANGS
201: VIFGCGARQS GDLDSSNEEA LDGILGFGKA NSSMISQLAS SGRVKKIFAH CLDGRNGGGI FAIGRVVQPK VNMTPLVPNQ PHYNVNMTAV QVGQEFLTIP
301: ADLFQPGDRK GAIIDSGTTL AYLPEIIYEP LVKKITSQEP ALKVHIVDKD YKCFQYSGRV DEGFPNVTFH FENSVFLRVY PHDYLFPHEG MWCIGWQNSA
401: MQSRDRRNMT LLGDLVLSNK LVLYDLENQL IGWTEYNCSS SIKVKDEGTG TVHLVGSHFI SSALPLDTSM CLLFSLLLLM TLFLL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)