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AT1G05790.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
endoplasmic reticulum 0.836
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:23667806 (2013): plastid plastid thylakoid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : lipase class 3 family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
lipase class 3 family protein; FUNCTIONS IN: triglyceride lipase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, class 3 (InterPro:IPR002921); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT2G42450.1); Has 496 Blast hits to 490 proteins in 107 species: Archae - 0; Bacteria - 1; Metazoa - 175; Fungi - 34; Plants - 194; Viruses - 0; Other Eukaryotes - 92 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XRFIeggNOG:KOG2088EMBL:CP002684EnsemblPlants:AT1G05790
EnsemblPlants:AT1G05790.1entrez:837088ExpressionAtlas:A8MRJ1Gene3D:3.40.50.1820
GeneID:837088GO:GO:0006629GO:GO:0016021GO:GO:0016787
Gramene:AT1G05790.1hmmpanther:PTHR21493hmmpanther:PTHR21493:SF140HOGENOM:HOG000015174
InParanoid:A8MRJ1InterPro:IPR002921InterPro:IPR029058OMA:LMAITIM
PaxDb:A8MRJ1Pfam:PF01764Pfscan:PS51257PhylomeDB:A8MRJ1
PRIDE:A8MRJ1ProteinModelPortal:A8MRJ1Proteomes:UP000006548RefSeq:NP_172070.2
SUPFAM:SSF53474TAIR:AT1G05790TMHMM:TMhelixUniGene:At.42371
UniProt:A8MRJ1
Coordinates (TAIR10) chr1:+:1733039..1737365
Molecular Weight (calculated) 76950.50 Da
IEP (calculated) 5.74
GRAVY (calculated) -0.03
Length 687 amino acids
Sequence (TAIR10)
(BLAST)
001: MWISRLKRVR RTIMVLGVAN FVVIVSGCVL TLVSDADCDS PGQLFPLFAV CFAAGVKLAA MVKVGTTQEL MAMTIMDSPT QNNHQRKLKY KTWLWWTRFA
101: MVITVLQFIG ATYLLFRLAK YVSRDGLPRN CVLGLSPDTG GWKQTLQVTF LITVCFVALA QCFTGSDILQ WRGVIEEDEV CSVARLLGDL VSYRASGTGH
201: LEFLAGLALL QSNSQFPESY EDCMEAPAFH LQEAAMLHKF AEAAYTGPLL DVGRNPALFL CTWICRQGIL TPWSRKWRPK LDGDNWWRGH AAAFLKFINF
301: PAHVLRRGRI CREKCKATYF VVVLHYLRCV VIAVRGTETA EDLITDGLGR ACSLTVEDLD GLTNHVHGMD TSRKHYGHSG IVEAARDLFM QIEGDPKSGE
401: SESSGFLSSL IGDGCECDGY SIRIVGHSLG GAIASLLGIR LRCRFPNLYV YAYGPLPCVD SDVAEACSEF VTSIVLDNEF SSRLSYGSIR RLQVAAIKVL
501: SQDPKADTAL IFRLARRFLS ASKRQRENVE EKTSEEAIDV NNSPESQHDQ IYPIWEEAEA EMQQDSEEFI NPFHGMASED NPVSQFMETG PTKEDDDEAP
601: EMFMPGLVIH IVPEGNNMSV PIWRGWPICD VTDGYKAYVA NRESFKEIMV SPSMFLDHLP WRCRHALQKV LESRNLFFDL TSETDIV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)