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AT1G05720.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 0.979
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : selenoprotein family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
selenoprotein family protein; FUNCTIONS IN: selenium binding; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sep15/SelM redox (InterPro:IPR014912); Has 200 Blast hits to 200 proteins in 73 species: Archae - 0; Bacteria - 0; Metazoa - 137; Fungi - 0; Plants - 49; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG4111MSSeggNOG:KOG3384EMBL:AK118712EMBL:BT004965
EMBL:CP002684EnsemblPlants:AT1G05720EnsemblPlants:AT1G05720.1entrez:837079
GeneID:837079Gramene:AT1G05720.1hmmpanther:PTHR13077hmmpanther:PTHR13077:SF6
HOGENOM:HOG000238561InterPro:IPR012336InterPro:IPR014912KEGG:ath:AT1G05720
OMA:VCTCKFGPfam:PF08806PhylomeDB:Q8GWP6Proteomes:UP000006548
RefSeq:NP_563747.1SMR:Q8GWP6STRING:3702.AT1G05720.1SUPFAM:SSF52833
TAIR:AT1G05720UniGene:At.42377UniGene:At.70438UniProt:Q8GWP6
Coordinates (TAIR10) chr1:-:1717677..1718849
Molecular Weight (calculated) 18574.60 Da
IEP (calculated) 4.81
GRAVY (calculated) -0.21
Length 163 amino acids
Sequence (TAIR10)
(BLAST)
001: MKQREMAKMV VLSAMMILIL ASTISAKEQL STKECEDLGF SGLALCSDCH SLSEYVKDQE LVSDCLKCCA DDSEDSMSKV TYSGAILEVC MRKLVFYPEI
101: VGFIEEEKEK FPSVKVQYIF NSPPKLIMLD EDGEHKESIR IDNWKREHLL QYMREKVKPT AAS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)