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AT1G05710.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
basic helix-loop-helix (bHLH) DNA-binding superfamily protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: response to ethylene stimulus, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT2G31730.1); Has 1005 Blast hits to 1005 proteins in 35 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1005; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
EMBL:AJ576040EMBL:AK230257EMBL:CP002684EnsemblPlants:AT1G05710EnsemblPlants:AT1G05710.1EnsemblPlants:AT1G05710.3EnsemblPlants:AT1G05710.4
EnsemblPlants:AT1G05710.5entrez:837078ExpressionAtlas:Q7XJU2Gene3D:4.10.280.10GeneID:837078Gramene:AT1G05710.1Gramene:AT1G05710.3
Gramene:AT1G05710.4Gramene:AT1G05710.5hmmpanther:PTHR16223hmmpanther:PTHR16223:SF41HOGENOM:HOG000240890InterPro:IPR011598KEGG:ath:AT1G05710
Pfscan:PS50888PhylomeDB:Q7XJU2PROSITE:PS50888Proteomes:UP000006548RefSeq:NP_001184916.1RefSeq:NP_563746.1RefSeq:NP_973764.1
RefSeq:NP_973765.1SUPFAM:SSF47459TAIR:AT1G05710UniGene:At.42378UniGene:At.72027UniProt:Q7XJU2
Coordinates (TAIR10) chr1:+:1716198..1717023
Molecular Weight (calculated) 16611.80 Da
IEP (calculated) 6.79
GRAVY (calculated) -0.40
Length 149 amino acids
Sequence (TAIR10)
(BLAST)
001: MEFSRDAGMM MENKRNVCSL GESSIKRHKS DLSFSSKERK DKVGERISAL QQIVSPYGKT DTASVLLDAM HYIEFLHEQV KVLSAPYLQT VPDATQEELE
101: QYSLRNRGLC LVPMENTVGV AQSNGADIWA PVKTPLSPAF SVTSQSPFR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)