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AT1G05620.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : uridine-ribohydrolase 2
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
uridine-ribohydrolase 2 (URH2); CONTAINS InterPro DOMAIN/s: Inosine/uridine-preferring nucleoside hydrolase (InterPro:IPR001910); BEST Arabidopsis thaliana protein match is: uridine-ribohydrolase 1 (TAIR:AT2G36310.1); Has 6369 Blast hits to 6297 proteins in 1349 species: Archae - 75; Bacteria - 4652; Metazoa - 179; Fungi - 246; Plants - 186; Viruses - 0; Other Eukaryotes - 1031 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-354-MONOMEREC:3.2.2.3eggNOG:COG1957eggNOG:KOG2938
EMBL:AC007153EMBL:AY087913EMBL:BT002049EMBL:BT008720
EMBL:CP002684EnsemblPlants:AT1G05620EnsemblPlants:AT1G05620.1entrez:837068
Gene3D:3.90.245.10GeneID:837068Genevisible:Q8LAC4GO:GO:0005829
GO:GO:0006148GO:GO:0010150GO:GO:0035251GO:GO:0045437
GO:GO:0047724gramene_pathway:3.2.2.2gramene_pathway:PWY-6596hmmpanther:PTHR12304
hmmpanther:PTHR12304:SF1HOGENOM:HOG000218838InParanoid:Q8LAC4InterPro:IPR001910
InterPro:IPR023186KEGG:ath:AT1G05620OMA:FAQYLCKPANTHER:PTHR12304
PaxDb:Q8LAC4Pfam:PF01156Pfam:Q8LAC4PhylomeDB:Q8LAC4
PIR:C86190PRIDE:Q8LAC4PRO:PR:Q8LAC4ProteinModelPortal:Q8LAC4
Proteomes:UP000006548RefSeq:NP_001117234.1RefSeq:NP_563745.1SMR:Q8LAC4
STRING:3702.AT1G05620.1SUPFAM:SSF53590TAIR:AT1G05620tair10-symbols:URH2
UniGene:At.42386UniProt:Q8LAC4
Coordinates (TAIR10) chr1:+:1679286..1681527
Molecular Weight (calculated) 34669.90 Da
IEP (calculated) 4.82
GRAVY (calculated) 0.13
Length 322 amino acids
Sequence (TAIR10)
(BLAST)
001: MAIGDRKKII IDTDPGIDDA MAIFVALNSP EVDVIGLTTI FGNVYTTLAT RNALHLLEVA GRTDIPVAEG THKTFLNDTK LRIADFVHGK DGLGNQNFPP
101: PKGKPIEKSG PEFLVEQAKL CPGEITVVAL GPLTNLALAV QLDPEFSKNV GQIVLLGGAF AVNGNVNPAS EANIFGDPEA ADIVFTCGAD IIAVGINVTH
201: QVIMTADDKD KLASSKGKLA QYLCKILDVY YDYHLTAYEI KGVYLHDPAT ILAAFLPSLF TYTEGVARVQ TSGITRGLTL LYNNLKRFEE ANEWSDKPTV
301: KVAVTVDAPA VVKLIMDRLM ES
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)