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AT1G05575.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
endoplasmic reticulum 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:21443605 (2012): endoplasmic reticulum
  • PMID:12837943 (2003): endoplasmic reticulum
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: anaerobic respiration; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G31945.1); Has 63 Blast hits to 63 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 63; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J3Q1eggNOG:ENOG410Z762EMBL:AK118716EMBL:AY086728EMBL:BT004961EMBL:CP002684EnsemblPlants:AT1G05575
EnsemblPlants:AT1G05575.1entrez:837061GeneID:837061GO:GO:0005783GO:GO:0009061Gramene:AT1G05575.1hmmpanther:PTHR34268
hmmpanther:PTHR34268:SF2HOGENOM:HOG000239539IntAct:Q8LC91KEGG:ath:AT1G05575OMA:MLMKVSIPhylomeDB:Q8LC91Proteomes:UP000006548
RefSeq:NP_563744.1STRING:3702.AT1G05575.1TAIR:AT1G05575TMHMM:TMhelixUniGene:At.42391UniProt:Q8LC91
Coordinates (TAIR10) chr1:-:1661829..1662098
Molecular Weight (calculated) 9525.80 Da
IEP (calculated) 10.56
GRAVY (calculated) 0.37
Length 89 amino acids
Sequence (TAIR10)
(BLAST)
1: MEGSFEGMLM KVSIFALIQG LVYLILSKSS SVFSTSKTMK RAYSFRSARS ISIRRILAVL QDMPAGGEMS PSAMGPSLAS SLSSPSEII
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)