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AT1G05470.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.975
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : DNAse I-like superfamily protein
Curator
Summary (TAIR10)
Encodes an inositol polyphosphate 5' phosphatase (5PTase) that is required for the proper recruitment of cells into developing vascular tissue in leaves and cotyledons. It is most similar to Type I 5PTases that are known to cleave a phosphate from IP3 or IP4. cvp2 mutants have elevated levels of IP3 and are hypersensitive to ABA in seed germination assays.
Computational
Description (TAIR10)
COTYLEDON VASCULAR PATTERN 2 (CVP2); FUNCTIONS IN: hydrolase activity, inositol trisphosphate phosphatase activity; INVOLVED IN: in 8 processes; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Inositol polyphosphate related phosphatase (InterPro:IPR000300), Endonuclease/exonuclease/phosphatase (InterPro:IPR005135); BEST Arabidopsis thaliana protein match is: CVP2 like 1 (TAIR:AT2G32010.2); Has 2640 Blast hits to 2079 proteins in 233 species: Archae - 0; Bacteria - 28; Metazoa - 855; Fungi - 611; Plants - 735; Viruses - 0; Other Eukaryotes - 411 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G05470-MONOMERBioGrid:22290EC:3.1.3.36EC:3.1.3.86eggNOG:COG5411eggNOG:KOG0565EMBL:AC005106
EMBL:BX816898EMBL:CP002684EnsemblPlants:AT1G05470EnsemblPlants:AT1G05470.1entrez:837048Gene3D:3.60.10.10GeneID:837048
Genevisible:Q9LR47GO:GO:0004439GO:GO:0005622GO:GO:0009737GO:GO:0009738GO:GO:0010051GO:GO:0010067
GO:GO:0010305GO:GO:0010588GO:GO:0030154GO:GO:0032957GO:GO:0034485GO:GO:0046030GO:GO:0046855
GO:GO:0046856GO:GO:0048016hmmpanther:PTHR11200hmmpanther:PTHR11200:SF174HOGENOM:HOG000241161InParanoid:Q9LR47InterPro:IPR000300
InterPro:IPR005135KEGG:ath:AT1G05470OMA:ESAHNRIPaxDb:Q9LR47Pfam:PF03372Pfam:Q9LR47PhylomeDB:Q9LR47
PRIDE:Q9LR47PRO:PR:Q9LR47ProteinModelPortal:Q9LR47Proteomes:UP000006548Reactome:R-ATH-1660514Reactome:R-ATH-1855183Reactome:R-ATH-1855204
Reactome:R-ATH-194840RefSeq:NP_172038.4SMART:SM00128SMR:Q9LR47STRING:3702.AT1G05470.1SUPFAM:SSF56219TAIR:AT1G05470
tair10-symbols:CVP2UniGene:At.42397UniProt:Q9LR47
Coordinates (TAIR10) chr1:-:1608558..1611291
Molecular Weight (calculated) 70856.50 Da
IEP (calculated) 9.71
GRAVY (calculated) -0.87
Length 617 amino acids
Sequence (TAIR10)
(BLAST)
001: MREEKSKTNK LAWSKKMVRK WFNIKSKTEE FQADDPSSAG IEVEHRSSFS AEKAPSTIKN TKTEKLSKNW EQQARQRRMN YENPRIIDVQ NYSIFVATWN
101: VAGRSPPSDL NLDEWLHSSA PADIYVLGFQ EIVPLNAGNV LGAEDNGPAQ KWLSLIRKTL NNRPGTSGTS GYHTPSPIPV PMAELDADFS GSTRQKNSTF
201: FHRRSFQTPS STWNDPSIPQ PGLDRRFSVC DRVFFSHRPS DFDPSFRGSS SSHRPSDYSR RPSDYSRRPS DYSRRPSDYS RRPSDSRPSD YSRPSDYYSR
301: PSDYSRPSDF SRSSDDDNGL GDSPSTVLYS PGSAANENGY RIPWNSSQYC LVASKQMVGV FLTIWVKSEL REHVKNMKVS CVGRGLMGYL GNKGSISISM
401: LLHQTSFCFV CTHLTSGQKE GDELKRNSDV MEILKKTRFP RVKSSEEEKS PENILQHDRV IWLGDLNYRI ALSYRSAKAL VEMQNWRALL ENDQLRIEQK
501: RGHVFKGWNE GKIYFPPTYK YSRNSDRYSG DDLHPKEKRR TPAWCDRILW FGEGLHQLSY VRGESRFSDH RPVYGIFCAE VESAHNRIKR TTSYSASRVQ
601: AEELLPYSRG YTELSFF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)