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AT1G05460.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.960
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : P-loop containing nucleoside triphosphate hydrolases superfamily protein
Curator
Summary (TAIR10)
Encodes a protein with similarity to RNA helicases. Mutants are defective in post-transcriptional gene silencing.
Computational
Description (TAIR10)
SILENCING DEFECTIVE (SDE3); FUNCTIONS IN: RNA helicase activity; INVOLVED IN: virus induced gene silencing; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Restriction endonuclease, type I, R subunit/Type III, Res subunit (InterPro:IPR006935), DNA helicase, UvrD/REP type (InterPro:IPR000212); BEST Arabidopsis thaliana protein match is: RNA helicase, putative (TAIR:AT5G47010.1); Has 8827 Blast hits to 7137 proteins in 1206 species: Archae - 219; Bacteria - 2402; Metazoa - 1784; Fungi - 1431; Plants - 666; Viruses - 219; Other Eukaryotes - 2106 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G05460-MONOMERBioGrid:22289EC:3.6.4.13eggNOG:COG1112eggNOG:KOG1804EMBL:AC005106EMBL:AF339908
EMBL:AK117698EMBL:CP002684EnsemblPlants:AT1G05460EnsemblPlants:AT1G05460.1entrez:837047Gene3D:3.40.50.300GeneID:837047
Genevisible:Q8GYD9GO:GO:0003724GO:GO:0005524GO:GO:0005737GO:GO:0009616GO:GO:0035194Gramene:AT1G05460.1
hmmpanther:PTHR10887hmmpanther:PTHR10887:SF362HOGENOM:HOG000239755InParanoid:Q8GYD9InterPro:IPR026127InterPro:IPR027417iPTMnet:Q8GYD9
KEGG:ath:AT1G05460KO:K18422OMA:RPYQGFIPANTHER:PTHR10887:SF362PaxDb:Q8GYD9Pfam:PF13086Pfam:PF13087
Pfam:Q8GYD9PhylomeDB:Q8GYD9PIR:C86189PRIDE:Q8GYD9PRO:PR:Q8GYD9ProteinModelPortal:Q8GYD9Proteomes:UP000006548
RefSeq:NP_172037.1SMR:Q8GYD9STRING:3702.AT1G05460.1SUPFAM:SSF52540TAIR:AT1G05460tair10-symbols:SDE3UniGene:At.15329
UniGene:At.42398UniProt:Q8GYD9
Coordinates (TAIR10) chr1:-:1601357..1604658
Molecular Weight (calculated) 113369.00 Da
IEP (calculated) 4.69
GRAVY (calculated) -0.59
Length 1002 amino acids
Sequence (TAIR10)
(BLAST)
0001: MSVSGYKSDD EYSVIADKGE IGFIDYQNDG SSGCYNPFDE GPVVVSVPFP FKKEKPQSVT VGETSFDSFT VKNTMDEPVD LWTKIYASNP EDSFTLSILK
0101: PPSKDSDLKE RQCFYETFTL EDRMLEPGDT LTIWVSCKPK DIGLHTTVVT VDWGSDRVER VVFLLAEDKI SSSLTSNRPY SRSRRAPKKD FAVDDYVKGS
0201: RPSKVVERSF RNRLPLYEIP KEIREMIENK EFPDDLNEGL TARNYANYYK TLLIMEELQL EEDMRAYDME NVSMKRRGIY LSLEVPGLAE RRPSLVHGDF
0301: IFVRHAYDDG TDHAYQGFVH RVEADEVHMK FASEFHQRHT AGSVYNVRFT YNRINTRRLY QAVDAAEMLD PNFLFPSLHS GKRMIKTKPF VPISPALNAE
0401: QICSIEMVLG CKGAPPYVIH GPPGTGKTMT LVEAIVQLYT TQRNARVLVC APSNSAADHI LEKLLCLEGV RIKDNEIFRL NAATRSYEEI KPEIIRFCFF
0501: DELIFKCPPL KALTRYKLVV STYMSASLLN AEGVNRGHFT HILLDEAGQA SEPENMIAVS NLCLTETVVV LAGDPRQLGP VIYSRDAESL GLGKSYLERL
0601: FECDYYCEGD ENYVTKLVKN YRCHPEILDL PSKLFYDGEL VASKEDTDSV LASLNFLPNK EFPMVFYGIQ GCDEREGNNP SWFNRIEISK VIETIKRLTA
0701: NDCVQEEDIG VITPYRQQVM KIKEVLDRLD MTEVKVGSVE QFQGQEKQVI IISTVRSTIK HNEFDRAYCL GFLSNPRRFN VAITRAISLL VIIGNPHIIC
0801: KDMNWNKLLW RCVDNNAYQG CGLPEQEEFV EEPFKQEGSS NGPQYPPEAE WNNSGELNNG GANENGEWSD GWNNNGGTKE KNEWSDGWNS NGGGTKKKDE
0901: WSDGWDNNGG TNGINQEGSS NAPQDPQEAE WNDSGEVKNG GTKEKDVRSD GWNNNGGKNE KEECCDGWKD GGSGEEIKNG GKFETRGDFV AKEEDEWSDG
1001: WK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)