AT1G05460.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : P-loop containing nucleoside triphosphate hydrolases superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a protein with similarity to RNA helicases. Mutants are defective in post-transcriptional gene silencing. | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
SILENCING DEFECTIVE (SDE3); FUNCTIONS IN: RNA helicase activity; INVOLVED IN: virus induced gene silencing; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Restriction endonuclease, type I, R subunit/Type III, Res subunit (InterPro:IPR006935), DNA helicase, UvrD/REP type (InterPro:IPR000212); BEST Arabidopsis thaliana protein match is: RNA helicase, putative (TAIR:AT5G47010.1); Has 8827 Blast hits to 7137 proteins in 1206 species: Archae - 219; Bacteria - 2402; Metazoa - 1784; Fungi - 1431; Plants - 666; Viruses - 219; Other Eukaryotes - 2106 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:1601357..1604658 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 113369.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.69 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.59 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1002 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MSVSGYKSDD EYSVIADKGE IGFIDYQNDG SSGCYNPFDE GPVVVSVPFP FKKEKPQSVT VGETSFDSFT VKNTMDEPVD LWTKIYASNP EDSFTLSILK 0101: PPSKDSDLKE RQCFYETFTL EDRMLEPGDT LTIWVSCKPK DIGLHTTVVT VDWGSDRVER VVFLLAEDKI SSSLTSNRPY SRSRRAPKKD FAVDDYVKGS 0201: RPSKVVERSF RNRLPLYEIP KEIREMIENK EFPDDLNEGL TARNYANYYK TLLIMEELQL EEDMRAYDME NVSMKRRGIY LSLEVPGLAE RRPSLVHGDF 0301: IFVRHAYDDG TDHAYQGFVH RVEADEVHMK FASEFHQRHT AGSVYNVRFT YNRINTRRLY QAVDAAEMLD PNFLFPSLHS GKRMIKTKPF VPISPALNAE 0401: QICSIEMVLG CKGAPPYVIH GPPGTGKTMT LVEAIVQLYT TQRNARVLVC APSNSAADHI LEKLLCLEGV RIKDNEIFRL NAATRSYEEI KPEIIRFCFF 0501: DELIFKCPPL KALTRYKLVV STYMSASLLN AEGVNRGHFT HILLDEAGQA SEPENMIAVS NLCLTETVVV LAGDPRQLGP VIYSRDAESL GLGKSYLERL 0601: FECDYYCEGD ENYVTKLVKN YRCHPEILDL PSKLFYDGEL VASKEDTDSV LASLNFLPNK EFPMVFYGIQ GCDEREGNNP SWFNRIEISK VIETIKRLTA 0701: NDCVQEEDIG VITPYRQQVM KIKEVLDRLD MTEVKVGSVE QFQGQEKQVI IISTVRSTIK HNEFDRAYCL GFLSNPRRFN VAITRAISLL VIIGNPHIIC 0801: KDMNWNKLLW RCVDNNAYQG CGLPEQEEFV EEPFKQEGSS NGPQYPPEAE WNNSGELNNG GANENGEWSD GWNNNGGTKE KNEWSDGWNS NGGGTKKKDE 0901: WSDGWDNNGG TNGINQEGSS NAPQDPQEAE WNDSGEVKNG GTKEKDVRSD GWNNNGGKNE KEECCDGWKD GGSGEEIKNG GKFETRGDFV AKEEDEWSDG 1001: WK |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)