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AT1G05420.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 0.855
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : ovate family protein 12
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
ovate family protein 12 (OFP12); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF623 (InterPro:IPR006458); BEST Arabidopsis thaliana protein match is: ovate family protein 16 (TAIR:AT2G32100.1); Has 358 Blast hits to 358 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 358; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
BioGrid:22285eggNOG:ENOG410IZ8IeggNOG:ENOG410YWPIEMBL:AC005106
EMBL:CP002684EnsemblPlants:AT1G05420EnsemblPlants:AT1G05420.1entrez:837043
GeneID:837043GO:GO:0005634GO:GO:0006351GO:GO:0045892
Gramene:AT1G05420.1hmmpanther:PTHR33057hmmpanther:PTHR33057:SF21HOGENOM:HOG000090646
InParanoid:F4I8R6IntAct:F4I8R6InterPro:IPR006458KEGG:ath:AT1G05420
OMA:WSSSARCPaxDb:F4I8R6Pfam:F4I8R6Pfam:PF04844
Pfscan:PS51754PIR:A86189PRIDE:F4I8R6PRO:PR:F4I8R6
PROSITE:PS51754Proteomes:UP000006548RefSeq:NP_172033.1STRING:3702.AT1G05420.1
TAIR:AT1G05420tair10-symbols:ATOFP12tair10-symbols:OFP12TIGRfam:TIGR01568
TIGRFAMs:TIGR01568UniGene:At.51159UniProt:F4I8R6
Coordinates (TAIR10) chr1:+:1590073..1590753
Molecular Weight (calculated) 24968.80 Da
IEP (calculated) 5.53
GRAVY (calculated) -0.42
Length 226 amino acids
Sequence (TAIR10)
(BLAST)
001: MPRVMWKNFH LCFPSNLTKP SSSPSGATSD DPNRPSILLI NNFNLLYDDS SAAHRRLSKP LIHDVEPSST FTASTSTAAN SSSSSASYDD SDNYGFAPDD
101: DSPPPDLTAV LASRRFFFSS PGCSNSITDS PDLRCRDNYD TATRLLTGGT AVKHYVQSPD PYNDFRRSMQ EMIDAVTNAG DLRRYEFLHE LLLSYLSLNA
201: ADTHKFIIRA FADILVSLLS DGHRIS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)