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AT1G05410.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.863
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Protein of unknown function (DUF1423)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein of unknown function (DUF1423); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1423, plant (InterPro:IPR004082); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G14840.1); Has 192 Blast hits to 189 proteins in 31 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 10; Plants - 173; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IHMBeggNOG:ENOG410YJD3EMBL:AY065014EMBL:AY074502EMBL:AY096601EMBL:AY142043EMBL:CP002684
EnsemblPlants:AT1G05410EnsemblPlants:AT1G05410.1entrez:837042ExpressionAtlas:Q8VZE5GeneID:837042Gramene:AT1G05410.1hmmpanther:PTHR33345
hmmpanther:PTHR33345:SF2IntAct:Q8VZE5InterPro:IPR032881ncoils:CoilOMA:RYLYPPKPfam:PF07227PhylomeDB:Q8VZE5
Proteomes:UP000006548RefSeq:NP_563738.1STRING:3702.AT1G05410.1TAIR:AT1G05410UniGene:At.23911UniGene:At.66904UniProt:Q8VZE5
Coordinates (TAIR10) chr1:-:1585504..1587268
Molecular Weight (calculated) 53371.70 Da
IEP (calculated) 5.12
GRAVY (calculated) -0.47
Length 471 amino acids
Sequence (TAIR10)
(BLAST)
001: MDSMDIDQSN IGESPHLLLR PVSPLESGEG LPYAPENWPN PGDTWHWKVG PRISGKGYFV DRYLYPPKYL PGLDTEILRK NKVFRSRLSL QRYIRVHFPE
101: ADVQKFFASF SWSIPCRDGQ GVLPQKQVQL PVYSSDEDPM RDDGSDTAVC KAGNEKCRSL MPQCEAETLP AMPCDICCGE RKFCVDCCCI LCCKLISLEH
201: GGYSYIKCEA VVSEGHICGH VAHMNCALRA YLAGTIGGSM GLDTEYYCRR CDAKKDLFPH VNKFLEICQT VEYQGDVEKI LNLGICILRG AQRDNAKELL
301: NCIESTVIKL KCGTSLEDLW NDDTPTIWSD YSDSGEAREN DTLQSLQDVT PIGPIPFNHE AEMHKLEEEI GEVLRALRKA QEFEYQIAEG KLHAQKECLS
401: DLYRQLEKEK SELSRRVSGT DANSLMTNVL KRLDQIRKEV TKLKEMEEVA KGFGRTPRGV LEEYFHLNIE D
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)