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AT1G05385.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : photosystem II 11 kDa protein-related
Curator
Summary (TAIR10)
Encodes a Psb27 homolog involved in photosystem II biogenesis.
Computational
Description (TAIR10)
LOW PSII ACCUMULATION 19 (LPA19); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: photosystem II assembly; LOCATED IN: chloroplast thylakoid lumen, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 214 Blast hits to 214 proteins in 55 species: Archae - 0; Bacteria - 73; Metazoa - 0; Fungi - 0; Plants - 72; Viruses - 0; Other Eukaryotes - 69 (source: NCBI BLink).
Protein Annotations
BioGrid:22282eggNOG:ENOG410IYA6eggNOG:ENOG4111U0TEMBL:AC005106EMBL:AF370242EMBL:AK118288EMBL:AY142580
EMBL:CP002684EnsemblPlants:AT1G05385EnsemblPlants:AT1G05385.1entrez:837040GeneID:837040Genevisible:Q9ZVZ9GO:GO:0009507
GO:GO:0009543GO:GO:0010207Gramene:AT1G05385.1HAMAP:MF_01481hmmpanther:PTHR34041hmmpanther:PTHR34041:SF3HOGENOM:HOG000240416
InParanoid:Q9ZVZ9InterPro:IPR025585KEGG:ath:AT1G05385OMA:KFYSKAGPaxDb:Q9ZVZ9Pfam:PF13326Pfam:Q9ZVZ9
PhylomeDB:Q9ZVZ9PIR:G86188PRIDE:Q9ZVZ9PRO:PR:Q9ZVZ9ProteinModelPortal:Q9ZVZ9Proteomes:UP000006548RefSeq:NP_563737.1
SMR:Q9ZVZ9STRING:3702.AT1G05385.1TAIR:AT1G05385tair10-symbols:LPA19tair10-symbols:Psb27-H1UniGene:At.15340UniProt:Q9ZVZ9
Coordinates (TAIR10) chr1:-:1582747..1583648
Molecular Weight (calculated) 22268.50 Da
IEP (calculated) 8.67
GRAVY (calculated) -0.58
Length 199 amino acids
Sequence (TAIR10)
(BLAST)
001: MGFLVAVMNF SPTLVHHHMK SKPQCQNEKL RQGQTSSLFD RRGFLKCVVG ASSFMATIEF SGLQAQASEE KLDEGEGVVG AFKTLFDPNE RTKSGKELPK
101: AYLKSAREVV KTMRESLKEN PKDNAKFRRS ADAAKESIRD YLSNWRGQKT VAGEESYVEL ENVIRALAKF YSKAGPSAPL PDEVKTEILD DLNKAEEFL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)