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AT1G05280.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 0.918
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein of unknown function (DUF604)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein of unknown function (DUF604); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF604 (InterPro:IPR006740); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF604) (TAIR:AT4G15240.1); Has 523 Blast hits to 513 proteins in 78 species: Archae - 0; Bacteria - 0; Metazoa - 61; Fungi - 172; Plants - 273; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410YRJGeggNOG:KOG2246EMBL:CP002684EnsemblPlants:AT1G05280
EnsemblPlants:AT1G05280.1entrez:837026GeneID:837026GO:GO:0016021
Gramene:AT1G05280.1hmmpanther:PTHR10811hmmpanther:PTHR10811:SF19InParanoid:F4I8P5
InterPro:IPR006740KEGG:ath:AT1G05280OMA:VALNHSNPaxDb:F4I8P5
Pfam:PF04646PRIDE:F4I8P5ProteinModelPortal:F4I8P5Proteomes:UP000006548
RefSeq:NP_172020.1TAIR:AT1G05280TMHMM:TMhelixUniGene:At.42411
UniGene:At.74094UniProt:F4I8P5
Coordinates (TAIR10) chr1:-:1535444..1537414
Molecular Weight (calculated) 53034.00 Da
IEP (calculated) 8.98
GRAVY (calculated) -0.25
Length 461 amino acids
Sequence (TAIR10)
(BLAST)
001: MCLPFRPVSK TYYSSSSSTI VTRMVNCILL FVFILLVYLL ISASRLQSKN SIHAYFSSSD QDQSQSPTKI EHIVFGIGSS AISWRARREY VKLWWDAQKM
101: RGCVFVERPL PSSQNHTDSY LLPPVCVSQD TSRFRYTWRG GDRNAIRIAR CVLETVRLFN TSSEEVRWYV FGDDDTIFIP ENLARTLSKY DHTSWYYIGS
201: TSEIYHQNSM FGHDMAFGGG GYALSSSLAN VLARNFDSCI ERYPHLYGGD SRVYACVLEL GVGLSKEPGF HQFDVRGNAL GILTSHSTRP LVSLHHMAHI
301: DPIFPNSTTF SAVRHLFSAV QLDPLRIFQL SVCYDRWYSW TISVSWGYTV QIDGRHLFLR DVLRAQETFR PWQKSGGLAS VYTFNTREIH RDPCQRPVTF
401: YMQHVSSSSH DGTIKSVYKQ AYENCTYDPV TSPRKIHEIR VFSRRLDPNI RQQSPLEKII F
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)