AT1G05270.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : TraB family protein | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
TraB family protein; CONTAINS InterPro DOMAIN/s: Pheromone shutdown-related, TraB (InterPro:IPR002816); BEST Arabidopsis thaliana protein match is: TraB family protein (TAIR:AT2G32340.1); Has 779 Blast hits to 750 proteins in 262 species: Archae - 153; Bacteria - 256; Metazoa - 121; Fungi - 0; Plants - 106; Viruses - 0; Other Eukaryotes - 143 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:1531806..1534305 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 40744.00 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 4.63 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.04 | ||||||||||||||||||||||||||||
| Length | 371 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MTIEPTQSPS SEPEVHSGED FVHIDDPRPT GDISLSDSIV NVEKDELLDE AAEEEFRGSD SVFSGGDGGG ADDDGGECSS EATKVELPEE LAKSVVILTC 101: ESTADGGSCD VYLVGTAHVS KQSCLEVEAI ISILKPEVVF VELCSSRLSV LKPQTLKIPT MSDMIESWKQ KQNTFGILYG WFLAKIASHL EVFPGAEFRV 201: AYEEAIKYGG KVILGDRPVQ ITLKRTWAKM PLWHKVKFLY SILFQAVFLP GAEELEKMLK DMDNVDMVTL VIQEMSKEFP TLMDTIVHER DQYMASSLLR 301: VASDHSSVVA VIGKGHINGI KKNWKQPITM NDLMEIPSDK SVFTLKRIIS SVAVAVAGTA IVSGILLSRR K |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)