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AT1G05260.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
extracellular 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28155257 (2017): extracellular region plant-type cell wall
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:21109274 (2011): extracellular region
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Peroxidase superfamily protein
Curator
Summary (TAIR10)
Encodes a cold-inducible cationic peroxidase that is involved in the stress response. In response to low temperature, RCI3 transcripts accumulate in the aerial part and in roots of etiolated seedlings but only in roots of light-grown seedlings.
Computational
Description (TAIR10)
RARE COLD INDUCIBLE GENE 3 (RCI3); FUNCTIONS IN: peroxidase activity; INVOLVED IN: response to desiccation, response to cold, hyperosmotic salinity response; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Peroxidases heam-ligand binding site (InterPro:IPR019793), Peroxidase, active site (InterPro:IPR019794), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016); BEST Arabidopsis thaliana protein match is: Peroxidase superfamily protein (TAIR:AT3G21770.1); Has 4433 Blast hits to 4402 proteins in 259 species: Archae - 0; Bacteria - 4; Metazoa - 3; Fungi - 76; Plants - 4304; Viruses - 0; Other Eukaryotes - 46 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G05260-MONOMEREC:1.11.1.7eggNOG:ENOG410IFQReggNOG:ENOG410Y9MEEMBL:AC000098EMBL:AY084678EMBL:BT004817
EMBL:CP002684EMBL:U97684EnsemblPlants:AT1G05260EnsemblPlants:AT1G05260.1entrez:837028ExpressionAtlas:O23044ExpressionAtlas:Q0WSR2
GeneID:837028Genevisible:O23044GO:GO:0004601GO:GO:0005576GO:GO:0005783GO:GO:0006979GO:GO:0009269
GO:GO:0009409GO:GO:0009505GO:GO:0009664GO:GO:0020037GO:GO:0042538GO:GO:0042744GO:GO:0046872
GO:GO:0098869Gramene:AT1G05260.1hmmpanther:PTHR31235hmmpanther:PTHR31235:SF39HOGENOM:HOG000237556InParanoid:O23044IntAct:O23044
InterPro:IPR000823InterPro:IPR002016InterPro:IPR010255InterPro:IPR019793InterPro:IPR019794KEGG:00940+1.11.1.7KEGG:ath:AT1G05260
KO:K00430OMA:DLSYYRGPaxDb:O23044PeroxiBase:79Pfam:O23044Pfam:PF00141Pfscan:PS50873
PhylomeDB:O23044PIR:B86187PRIDE:O23044PRINTS:PR00458PRINTS:PR00461PRO:PR:O23044PROSITE:PS00435
PROSITE:PS00436PROSITE:PS50873ProteinModelPortal:O23044Proteomes:UP000006548RefSeq:NP_172018.1scanprosite:PS00435scanprosite:PS00436
SMR:O23044STRING:3702.AT1G05260.1SUPFAM:SSF48113TAIR:AT1G05260tair10-symbols:RCI3tair10-symbols:RCI3ATMHMM:TMhelix
UniGene:At.23986UniProt:O23044UniProt:Q0WSR2
Coordinates (TAIR10) chr1:+:1529827..1531271
Molecular Weight (calculated) 34907.70 Da
IEP (calculated) 8.49
GRAVY (calculated) 0.01
Length 326 amino acids
Sequence (TAIR10)
(BLAST)
001: MNCLIAIALS VSFFLVGIVG PIQAQLQMNF YANSCPNAEK IVQDFVSNHV SNAPSLAAAL IRMHFHDCFV RGCDGSVLIN STSGNAERDA TPNLTVRGFG
101: FIDAIKSVLE AQCPGIVSCA DIIALASRDA VVFTGGPNWS VPTGRRDGRI SNAAEALANI PPPTSNITNL QTLFANQGLD LKDLVLLSGA HTIGVSHCSS
201: FTNRLYNFTG RGGQDPALDS EYAANLKSRK CPSLNDNKTI VEMDPGSRKT FDLSYYQLVL KRRGLFQSDS ALTTNPTTLS NINRILTGSV GSFFSEFAKS
301: MEKMGRINVK TGSAGVVRRQ CSVANS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)