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AT1G05140.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Peptidase M50 family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Peptidase M50 family protein; FUNCTIONS IN: metalloendopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: chloroplast, plastid; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M50 (InterPro:IPR008915), PDZ/DHR/GLGF (InterPro:IPR001478), Peptidase M50, putative membrane-associated zinc metallopeptidase (InterPro:IPR004387); BEST Arabidopsis thaliana protein match is: ARABIDOPSIS SERIN PROTEASE (TAIR:AT2G32480.1); Has 10190 Blast hits to 7652 proteins in 2240 species: Archae - 41; Bacteria - 6892; Metazoa - 13; Fungi - 4; Plants - 72; Viruses - 0; Other Eukaryotes - 3168 (source: NCBI BLink).
Protein Annotations
EC:3.4.24.-eggNOG:COG0750eggNOG:ENOG410IH55EMBL:AC000098
EMBL:AY062687EMBL:AY139975EMBL:CP002684EnsemblPlants:AT1G05140
EnsemblPlants:AT1G05140.1entrez:839307Gene3D:2.30.42.10GeneID:839307
Genevisible:O23053GO:GO:0004222GO:GO:0009507GO:GO:0009706
GO:GO:0016021GO:GO:0046872Gramene:AT1G05140.1hmmpanther:PTHR22939
hmmpanther:PTHR22939:SF97HOGENOM:HOG000006282InterPro:IPR001478InterPro:IPR008915
iPTMnet:O23053KEGG:ath:AT1G05140MEROPS:M50.003OMA:ISHRIPH
PaxDb:O23053Pfam:O23053Pfam:PF02163Pfam:PF13180
Pfscan:PS50106PhylomeDB:O23053PIR:F86185PRIDE:O23053
PRO:PR:O23053PROSITE:PS50106ProteinModelPortal:O23053Proteomes:UP000006548
RefSeq:NP_563729.1SMART:SM00228SMR:O23053STRING:3702.AT1G05140.1
SUPFAM:SSF50156TAIR:AT1G05140TMHMM:TMhelixUniGene:At.10415
UniGene:At.20887UniProt:O23053
Coordinates (TAIR10) chr1:+:1482681..1484006
Molecular Weight (calculated) 47777.90 Da
IEP (calculated) 9.61
GRAVY (calculated) 0.18
Length 441 amino acids
Sequence (TAIR10)
(BLAST)
001: MLLNISSSPI SHRIPHFLSD FNNPTSNFPP KSKTHLPKSN LSTLSNHSLY GTKNRAFYKN KRNPYNRTQA LGRFDFGSLE SVLEASAVLT AIIVVHETGH
101: FLAASLQGIR VSKFAIGFGP ILAKFNSNNV EYSLRAFPLG GFVGFPDNDP DSDIPVDDRN LLKNRPILDR VIVVSAGIVA NVIFAYAIIF TQVVSVGLPV
201: QESFPGVLVP DVKSFSAASR DGLLPGDVIL AVDGTELSNS GSDSVSKVVD VVKRNPEHNV LLRIERGKES FEIRITPDKS FDGTGKIGVQ LSPNVRFGKV
301: RPKNIPETFS FAGREFFGLS YNVLDSLKQT FLNFSQTASK VAGPVAIIAV GAEVARSNAD GLYQFAALLN LNLAVINLLP LPALDGGTLA LILLEAVRGG
401: RKLPLEVEQG IMSSGIMLVL FLGLFLIVKD TLNLDFIKEM L
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)