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AT1G04990.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Zinc finger C-x8-C-x5-C-x3-H type family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Zinc finger C-x8-C-x5-C-x3-H type family protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571); BEST Arabidopsis thaliana protein match is: zinc finger nuclease 2 (TAIR:AT2G32930.1); Has 1789 Blast hits to 1100 proteins in 186 species: Archae - 0; Bacteria - 0; Metazoa - 576; Fungi - 244; Plants - 789; Viruses - 0; Other Eukaryotes - 180 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5063eggNOG:KOG1677EMBL:AB493434EnsemblPlants:AT1G04990EnsemblPlants:AT1G04990.1EnsemblPlants:AT1G04990.2entrez:839351
ExpressionAtlas:C0SUT1Gene3D:4.10.1000.10GeneID:839351GO:GO:0046872Gramene:AT1G04990.1Gramene:AT1G04990.2hmmpanther:PTHR12506
hmmpanther:PTHR12506:SF24InterPro:IPR000571iPTMnet:C0SUT1KEGG:ath:AT1G04990OMA:NGHSTAYPaxDb:C0SUT1Pfam:PF00642
Pfam:Q94AD9Pfscan:PS50103PhylomeDB:C0SUT1PRIDE:C0SUT1PROSITE:PS50103ProteinModelPortal:C0SUT1RefSeq:NP_563725.1
RefSeq:NP_973759.1SMART:SM00356SMR:C0SUT1STRING:3702.AT1G04990.1SUPFAM:SSF90229TAIR:AT1G04990UniGene:At.21743
UniProt:C0SUT1UniProt:Q94AD9
Coordinates (TAIR10) chr1:-:1419368..1421454
Molecular Weight (calculated) 44706.80 Da
IEP (calculated) 8.16
GRAVY (calculated) -0.66
Length 404 amino acids
Sequence (TAIR10)
(BLAST)
001: MRTPMSDTQH VQSSLVSIRS SDKIEDAFRK MKVNETGVEE LNPYPDRPGE RDCQFYLRTG LCGYGSSCRY NHPTHLPQDV AYYKEELPER IGQPDCEYFL
101: KTGACKYGPT CKYHHPKDRN GAQPVMFNVI GLPMRLGEKP CPYYLRTGTC RFGVACKFHH PQPDNGHSTA YGMSSFPAAD LRYASGLTMM STYGTLPRPQ
201: VPQSYVPILV SPSQGFLPPQ GWAPYMAASN SMYNVKNQPY YSGSSASMAM AVALNRGLSE SSDQPECRFF MNTGTCKYGD DCKYSHPGVR ISQPPPSLIN
301: PFVLPARPGQ PACGNFRSYG FCKFGPNCKF DHPMLPYPGL TMATSLPTPF ASPVTTHQRI SPTPNRSDSK SLSNGKPDVK KESSETEKPD NGEVQDLSED
401: ASSP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)