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AT1G04960.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
endoplasmic reticulum 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Protein of unknown function (DUF1664)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein of unknown function (DUF1664); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1664 (InterPro:IPR012458); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1664) (TAIR:AT1G27000.1); Has 160 Blast hits to 159 proteins in 23 species: Archae - 0; Bacteria - 6; Metazoa - 0; Fungi - 0; Plants - 152; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IJSZeggNOG:ENOG410Y9WVEMBL:AC004809EMBL:AY059895
EMBL:AY087950EMBL:BT002098EMBL:CP002684EMBL:DQ446228
EnsemblPlants:AT1G04960EnsemblPlants:AT1G04960.1entrez:839346ExpressionAtlas:Q9MAU4
GeneID:839346Gramene:AT1G04960.1hmmpanther:PTHR31903hmmpanther:PTHR31903:SF2
InterPro:IPR012458ncoils:CoilPfam:PF07889PhylomeDB:Q9MAU4
PIR:B86183Proteomes:UP000006548RefSeq:NP_563723.1TAIR:AT1G04960
UniGene:At.23716UniProt:Q9MAU4
Coordinates (TAIR10) chr1:-:1408021..1410673
Molecular Weight (calculated) 34360.30 Da
IEP (calculated) 7.06
GRAVY (calculated) -0.11
Length 317 amino acids
Sequence (TAIR10)
(BLAST)
001: MAMQAGVQTS KVLILLGAGV SGSIVLRHGR LSDLIAQLQD LLNGAQGVES TPFKYDGALL AAQIRQLANE IKELTMTNPV TIFNGDSNSS GYASYLVPAA
101: AVGAMGYCYM WWKGWSFSDA MFVTKKNMAD AVASVSKQLD DLSDTLASTR KHLSQKLATL DWKVEEQNET SKMILSDVTE MRSSISQIGF DFKQLNEMIS
201: GIEGKIESLE SKQDVTLSGL WHLCQVAGVK DSTSTKVFQD VGERLPIDGK PSTNTSLSGL RFLTEGKEDA NVIHKPVMAK EIMVMGEKTK VTAAGRSRVH
301: RAFPGGISWV RDVSGLS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)