AT1G04930.1::SUBA5

AT1G04930.1

Subcellular Consensus
(Prediction and Experimental)

min:

:max

SUBAcon:
nucleus 1.000
What is SUBAcon?

Predictors

External Curations

no data

Experimental Localisations and PPI

FP	MS/MS	PPI
		PMID:23778966 (2013): AT4G30200.1:None: PMID:23778966 (2013): AT3G20740.1:None: PMID:23778966 (2013): AT5G15020.1:None: PMID:23778966 (2013): AT4G29000.1:None: PMID:23778966 (2013): AT1G70060.1:None: PMID:23778966 (2013): AT5G08450.1:None: PMID:23778966 (2013): AT2G41840.1:None: PMID:23778966 (2013): AT1G24190.1:None: PMID:23778966 (2013): AT1G10450.1:None: PMID:23778966 (2013): AT1G05190.1:None: PMID:23778966 (2013): AT3G24440.1:None: PMID:23778966 (2013): AT4G38130.1:None: PMID:23778966 (2013): AT4G16143.1:None: PMID:23778966 (2013): AT4G27090.1:None: PMID:23778966 (2013): AT4G16845.1:None: PMID:23778966 (2013): AT3G56340.1:None: PMID:23778966 (2013): AT3G03960.1:None: PMID:23778966 (2013): AT5G17690.1:None: PMID:23778966 (2013): AT3G20050.1:None: PMID:23778966 (2013): AT4G20300.1:None: PMID:23778966 (2013): AT3G06720.1:None: PMID:23778966 (2013): AT4G02020.1:None: PMID:23778966 (2013): AT3G05380.1:None: PMID:23778966 (2013): AT5G51230.1:None: PMID:23778966 (2013): AT2G40630.1:None: PMID:23778966 (2013): AT2G45250.1:None: PMID:23778966 (2013): AT2G32840.1:None: PMID:21798944 (2011): AT5G02150.1:None: PMID:21798944 (2011): AT5G24660.1:Y2H: PMID:21798944 (2011): AT4G24840.1:Y2H: PMID:21798944 (2011): AT5G61010.1:Y2H: PMID:21798944 (2011): AT3G27960.1:Y2H:

SUBAcon links
AGI-AGI relationships

Coexpression

PPI

AT1G79730.1 nucleus [6.76]
AT5G02850.1 nucleus [6.44]
AT1G55820.1 nucleus [6.11]
AT3G58630.1 nucleus [5.93]
AT4G17060.1 nucleus [5.71]
AT4G08960.1 nucleus [5.65]
AT2G32840.1 nucleus [5.38]
AT4G38180.1 nucleus [4.94]
AT1G08370.1 cytosol [4.86]
AT4G15410.1 nucleus [4.78]

AT3G56340.1 cytosol
AT4G27090.1 cytosol
AT2G41840.1 cytosol
AT3G03960.1 cytosol
AT3G20050.1 cytosol
AT4G24840.1 golgi
AT4G38130.1 nucleus
AT4G16845.1 nucleus
AT4G20300.1 nucleus
AT4G29000.1 nucleus
AT4G30200.1 nucleus
AT1G10450.1 nucleus
AT5G02150.1 nucleus
AT5G08450.1 nucleus
AT5G15020.1 nucleus
AT5G17690.1 nucleus
AT5G24660.1 nucleus
AT5G51230.1 nucleus
AT4G16143.1 nucleus
AT4G02020.1 nucleus
AT3G24440.1 nucleus
AT3G20740.1 nucleus
AT3G06720.1 nucleus
AT3G05380.1 nucleus
AT2G45250.1 nucleus
AT2G40630.1 nucleus
AT2G32840.1 nucleus
AT1G70060.1 nucleus
AT1G24190.1 nucleus
AT3G27960.1 plasma membrane
AT5G61010.1 plasma membrane
AT1G05190.1 plastid

Description (TAIR10)

protein_coding : hydroxyproline-rich glycoprotein family protein

Curator
Summary (TAIR10)

Computational
Description (TAIR10)

hydroxyproline-rich glycoprotein family protein; LOCATED IN: chloroplast; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; BEST Arabidopsis thaliana protein match is: proline-rich family protein (TAIR:AT2G32840.1); Has 1624 Blast hits to 1330 proteins in 201 species: Archae - 0; Bacteria - 140; Metazoa - 517; Fungi - 162; Plants - 364; Viruses - 182; Other Eukaryotes - 259 (source: NCBI BLink).

Protein Annotations

EMBL:AC004809	EMBL:AY085490	EMBL:CP002684	EnsemblPlants:AT1G04930
EnsemblPlants:AT1G04930.1	entrez:839377	ExpressionAtlas:Q9MAU1	GeneID:839377
GO:GO:0007049	GO:GO:0017053	Gramene:AT1G04930.1	hmmpanther:PTHR37173
hmmpanther:PTHR37173:SF1	HOGENOM:HOG000093098	InterPro:IPR028226	ncoils:Coil
Pfam:PF15306	PhylomeDB:Q9MAU1	PIR:G86182	Proteomes:UP000006548
RefSeq:NP_563722.1	TAIR:AT1G04930	UniGene:At.42424	UniProt:Q9MAU1

Coordinates (TAIR10)

chr1:-:1396546..1398988

Molecular Weight (calculated)

36795.90 Da

IEP (calculated)

10.74

GRAVY (calculated)

-0.74

Length

332 amino acids

Sequence (TAIR10)
(BLAST)

001: MSIPDPNSSA SLTVSPSLST ASETPVTPVN TVRPPPSQPP PAPPPLPPPT YRPIAPLRHP NPFQQQSAYS NNLYAHSIPV RRQIQDPSAV LYPFALPGRG
101: FSARPVRGFV ADPSVTAGNL SGYPPRPSFT YDPGPYEQRQ MESLLQQFIR ERNPQIRPLP RLGLGSPVGL GPIRASPQFL QPRVAPPPTS ILDTSRNRKA
201: RSKDGALAVV RGRKVRITEG SSSLYSLGRS WLKNGAHVGI QPQRSGIMKP LPKPLPVDLT TETSVPDDPD EESADEDKED EEAVKQLSEK DLLKRHIERA
301: KKVRAQLREE RSRRIRRYKE RITLILAQSE DR