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AT1G04850.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
golgi 0.889
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:21166475 (2011): cytosol
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : ubiquitin-associated (UBA)/TS-N domain-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
ubiquitin-associated (UBA)/TS-N domain-containing protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Ubiquitin-associated/translation elongation factor EF1B, N-terminal (InterPro:IPR000449), Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote (InterPro:IPR015940), PUB domain (InterPro:IPR018997), PUG domain (InterPro:IPR006567), Zinc finger, C2H2-type (InterPro:IPR007087), UBA-like (InterPro:IPR009060); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G48690.1); Has 9425 Blast hits to 9403 proteins in 278 species: Archae - 0; Bacteria - 0; Metazoa - 2591; Fungi - 765; Plants - 4746; Viruses - 72; Other Eukaryotes - 1251 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XQQKeggNOG:KOG2699EMBL:AC004809EMBL:AY062609
EMBL:AY088435EMBL:BT000147EMBL:CP002684EnsemblPlants:AT1G04850
EnsemblPlants:AT1G04850.1entrez:839399GeneID:839399GO:GO:0005829
GO:GO:0046872Gramene:AT1G04850.1hmmpanther:PTHR13020hmmpanther:PTHR13020:SF34
HOGENOM:HOG000239091IntAct:Q9MAT3InterPro:IPR007087InterPro:IPR009060
InterPro:IPR015940InterPro:IPR018997KEGG:ath:AT1G04850MEROPS:C19.089
ncoils:CoilOMA:WVVEHESPfam:PF00627Pfam:PF09409
Pfscan:PS50030PhylomeDB:Q9MAT3PIR:G86181PROSITE:PS00028
PROSITE:PS50030Proteomes:UP000006548RefSeq:NP_563718.1scanprosite:PS00028
SMART:SM00165SMART:SM00580SMR:Q9MAT3STRING:3702.AT1G04850.1
SUPFAM:0052385SUPFAM:SSF143503SUPFAM:SSF46934TAIR:AT1G04850
UniGene:At.21872UniProt:Q9MAT3
Coordinates (TAIR10) chr1:-:1365311..1368706
Molecular Weight (calculated) 46605.70 Da
IEP (calculated) 6.04
GRAVY (calculated) -0.75
Length 413 amino acids
Sequence (TAIR10)
(BLAST)
001: MAGVSLKCGD CGTLLKSVEE AQEHAELTSH SNFAESTEAV LNLVCTTCTK PCRSKIESDL HTKRTGHTEF VDKTLETIKP ISLEAPKVAM EIDDNASGSG
101: EAAEEMVVPD VDNNILEELE AMGFPKARAT RALHYSGNAS LEAAVNWVVE HENDPDVDEM PKVPSNSNVG PAKPALTPEE VKLKAQELRE RARKKKEEEE
201: KRMEREREKE RIRIGKELLE AKRMEEVNER KRLMFLRKAE KEEEKRAREK IRQKLEEDKA ERRRKLGLPP EDPATAAAKP SVPVVEEKKV TLPIRPATKT
301: EQMRECLRSL KQAHKEDDAK VKRAFQTLLT YMGNVAKNPD EEKFRKIRLT NQTFQERVGS LRGGIEFMEL CGFEKIEGGE FLFLPRDKID SAIINSAGTE
401: LNSAINNPFF GVL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)