AT1G04830.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.992 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Ypt/Rab-GAP domain of gyp1p superfamily protein | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Ypt/Rab-GAP domain of gyp1p superfamily protein; FUNCTIONS IN: RAB GTPase activator activity; INVOLVED IN: regulation of Rab GTPase activity; LOCATED IN: intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RabGAP/TBC (InterPro:IPR000195); BEST Arabidopsis thaliana protein match is: Ypt/Rab-GAP domain of gyp1p superfamily protein (TAIR:AT4G13730.1); Has 3724 Blast hits to 3613 proteins in 228 species: Archae - 0; Bacteria - 2; Metazoa - 1821; Fungi - 641; Plants - 593; Viruses - 0; Other Eukaryotes - 667 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:1359087..1361844 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 51097.90 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 7.96 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.42 | ||||||||||||||||||||||||||||
| Length | 448 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MVRKKVPEWL NSTMWSTPPP PSSYDDGLLR HSPVTKMKEE AESISVAPRL NSAPPPSSNT SVPSPSHRPR NGNSISGGSG EYGHSVGPSA EDFSRQAHVS 101: AELSKKVINM KELRSLALQS LPDSPGIRST VWKLLLGYLP PERSLWSTEL KQKRSQYKHY KDELLTSPSE ITWKMVRSKG FDNYDLKSES RCMLARSRIT 201: DEDHPLSLGK ASIWNTYFQD TETIEQIDRD VKRTHPDIPF FSGESSFARS NQESMKNILL VFAKLNQGIR YVQGMNEILA PIFYVFRNDP DEDSSSHAEA 301: DAFFCFVELL SGFRDFYCQQ LDNSVVGIRS AITRLSQLVR KHDEELWRHL EITTKVNPQF YAFRWITLLL TQEFSFFDSL HIWDALLSDP EGPLESLLGI 401: CCAMLVLVRR RLIAGDFTSN MKLLQHYPTT NISHLLYVAN KLRSKMLV |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)