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AT1G04770.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.995
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT5G48850.1); Has 226 Blast hits to 224 proteins in 29 species: Archae - 0; Bacteria - 22; Metazoa - 1; Fungi - 0; Plants - 173; Viruses - 0; Other Eukaryotes - 30 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IIJ9eggNOG:ENOG410YFASEMBL:AC004809EMBL:AK227309EMBL:AY139988EMBL:BT008709EMBL:CP002684
EnsemblPlants:AT1G04770EnsemblPlants:AT1G04770.1entrez:839418Gene3D:1.25.40.10GeneID:839418Genevisible:Q8L730GO:GO:0005634
GO:GO:0009658GO:GO:0010438Gramene:AT1G04770.1hmmpanther:PTHR36326hmmpanther:PTHR36326:SF1HOGENOM:HOG000239762InParanoid:Q8L730
InterPro:IPR011990InterPro:IPR013026InterPro:IPR019734KEGG:ath:AT1G04770OMA:FEEISPCPaxDb:Q8L730Pfam:PF00515
Pfam:PF13181Pfam:Q8L730Pfscan:PS50005Pfscan:PS50293PIR:G86180PRIDE:Q8L730PRO:PR:Q8L730
PROSITE:PS50005PROSITE:PS50293ProteinModelPortal:Q8L730Proteomes:UP000006548RefSeq:NP_171969.2SMART:SM00028SMR:Q8L730
STRING:3702.AT1G04770.1SUPFAM:SSF48452TAIR:AT1G04770UniGene:At.42432UniGene:At.74161UniProt:Q8L730
Coordinates (TAIR10) chr1:-:1336564..1337767
Molecular Weight (calculated) 34661.80 Da
IEP (calculated) 6.09
GRAVY (calculated) -0.44
Length 303 amino acids
Sequence (TAIR10)
(BLAST)
001: MMMMIQRRGG ERQDSSAAAY NVVHKLPHGD SPYVRAKHVQ LVEKDAEAAI ELFWIAIKAR DRVDSALKDM ALLMKQQNRA EEAIDAIQSF RDLCSRQAQE
101: SLDNVLIDLY KKCGRIEEQV ELLKQKLWMI YQGEAFNGKP TKTARSHGKK FQVTVEKETS RILGNLGWAY MQLMDYTAAE AVYRKAQLIE PDANKACNLC
201: TCLIKQGKHD EARSILFRDV LMENKEGSGD PRLMARVQEL LSELKPQEEE AAASVSVECE VGIDEIAVVE GLDEFVKEWR RPYRTRRLPI FEEILPLRDQ
301: LAC
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)