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AT1G04750.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25971551 (2015): plasma membrane
  • PMID:22022536 (2011): cytosol cell plate
  • PMID:22022536 (2011): Golgi trans-Golgi network
  • PMID:15876431 (2005): plasma membrane
  • PMID:15342965 (2004): plasma membrane
  • PMID:26781341 (2016): plasma membrane
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25641898 (2015): plasma membrane
  • PMID:23990937 (2013): plasma membrane
  • PMID:23903016 (2013): plant-type vacuole plant-type vacuole membrane
  • PMID:21826108 (2012): Golgi trans-Golgi network multivesicular body
  • PMID:21433285 (2011): plasma membrane
  • PMID:19334764 (2009): plasma membrane
  • PMID:17644812 (2007): plasma membrane
  • PMID:17317660 (2007): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : vesicle-associated membrane protein 721
Curator
Summary (TAIR10)
vesicle-associated membrane protein 7B (At VAMP7B) mRNA,
Computational
Description (TAIR10)
vesicle-associated membrane protein 721 (VAMP721); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: transport, vesicle-mediated transport; LOCATED IN: endosome, plasma membrane, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Longin (InterPro:IPR010908), Longin-like (InterPro:IPR011012), Synaptobrevin (InterPro:IPR001388); BEST Arabidopsis thaliana protein match is: synaptobrevin-related protein 1 (TAIR:AT2G33120.1); Has 2472 Blast hits to 2471 proteins in 261 species: Archae - 0; Bacteria - 0; Metazoa - 997; Fungi - 453; Plants - 611; Viruses - 0; Other Eukaryotes - 411 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5143eggNOG:KOG0859EMBL:AK175215EMBL:AK175598EMBL:AK175611EMBL:AK175674EMBL:AK175794
EMBL:AK175829EMBL:AK175972EMBL:AK176231EMBL:AK176285EMBL:AK176291EMBL:AK176386EMBL:AK176652
EMBL:AK176656EMBL:AK176879EnsemblPlants:AT1G04750EnsemblPlants:AT1G04750.1entrez:839419ExpressionAtlas:Q681L9Gene3D:1.10.3840.10
Gene3D:3.30.450.50GeneID:839419GO:GO:0016021GO:GO:0016192Gramene:AT1G04750.1hmmpanther:PTHR21136hmmpanther:PTHR21136:SF95
InterPro:IPR001388InterPro:IPR010908InterPro:IPR011012OMA:PMACLERPfam:PF00957Pfam:PF13774Pfam:Q9ZTW3
Pfscan:PS50859Pfscan:PS50892PhylomeDB:Q681L9PRINTS:PR00219PROSITE:PS00417PROSITE:PS50859PROSITE:PS50892
RefSeq:NP_171967.1scanprosite:PS00417SMART:SM01270SMR:Q681L9STRING:3702.AT1G04750.1SUPFAM:SSF58038SUPFAM:SSF64356
TAIR:AT1G04750tair10-symbols:AT VAMP7Btair10-symbols:ATVAMP721tair10-symbols:VAMP721tair10-symbols:VAMP7BTMHMM:TMhelixUniGene:At.20250
UniGene:At.67689UniProt:Q681L9UniProt:Q9ZTW3
Coordinates (TAIR10) chr1:-:1331857..1333426
Molecular Weight (calculated) 24766.30 Da
IEP (calculated) 9.00
GRAVY (calculated) -0.12
Length 219 amino acids
Sequence (TAIR10)
(BLAST)
001: MAQQSLIYSF VARGTVILVE FTDFKGNFTS IAAQCLQKLP SSNNKFTYNC DGHTFNYLVE DGFTYCVVAV DSAGRQIPMS FLERVKEDFN KRYGGGKAAT
101: AQANSLNKEF GSKLKEHMQY CMDHPDEISK LAKVKAQVSE VKGVMMENIE KVLDRGEKIE LLVDKTENLR SQAQDFRTTG TQMRRKMWLQ NMKIKLIVLA
201: IIIALILIIV LSVCHGFKC
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)