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AT1G04590.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT4G21190.1); Has 111 Blast hits to 111 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 109; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Protein Annotations
DNASU:839484eggNOG:ENOG410IIIBeggNOG:ENOG410YBEXEMBL:AF360235EMBL:AY040034EMBL:CP002684EnsemblPlants:AT1G04590
EnsemblPlants:AT1G04590.1entrez:839484ExpressionAtlas:Q9C5I2GeneID:839484Gramene:AT1G04590.1hmmpanther:PTHR24015hmmpanther:PTHR24015:SF716
HOGENOM:HOG000131785KEGG:ath:AT1G04590ncoils:CoilPhylomeDB:Q9C5I2Proteomes:UP000006548RefSeq:NP_563712.1STRING:3702.AT1G04590.2
TAIR:AT1G04590UniGene:At.56217UniProt:Q9C5I2
Coordinates (TAIR10) chr1:-:1258760..1261411
Molecular Weight (calculated) 43045.30 Da
IEP (calculated) 9.14
GRAVY (calculated) -0.62
Length 381 amino acids
Sequence (TAIR10)
(BLAST)
001: MAGFSSLIPR TLLKRAVSSA TRNLTAPLAS ISAARNLFIG GGCDENYGEP GVFSHSNGIR KYNTVGNAGA LTGPFHHLLG VNQTNKPAFL RVQSMSYQFV
101: ADSHSSPKRI VKNEDEEDFS DSSKKGNAEN PRKHQIGENI PKKDKIKFLV NTLLDIEDNK EAVYGALDAW VAWERNFPIA SLKIVIASLE KEHQWHRMVQ
201: VIKWILSKGQ GNTMGTYGQL IRALDMDRRA EEAHVIWRKK VGNDLHSVPW QLCLQMMRIY FRNNMLQELV KLFKDLESYD RKPPDKHIVQ TVADAYELLG
301: MLDEKERVVT KYSHLLLGTP SDDKPSRSSR KKKKPELRIP EATTEGAVDA AKAEIQEERK ENLDNHQESE AATEKQFEHG A
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)