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AT1G04550.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : AUX/IAA transcriptional regulator family protein
Curator
Summary (TAIR10)
IAA12/BDL plays a role in auxin-mediated processes of apical-basal patterning in the embryo. bdl mutants lack a primary root meristem
Computational
Description (TAIR10)
indole-3-acetic acid inducible 12 (IAA12); FUNCTIONS IN: transcription repressor activity, sequence-specific DNA binding transcription factor activity; INVOLVED IN: xylem and phloem pattern formation, response to auxin stimulus, embryonic pattern specification, root development; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525), AUX/IAA protein (InterPro:IPR003311); BEST Arabidopsis thaliana protein match is: auxin-induced protein 13 (TAIR:AT2G33310.3); Has 1087 Blast hits to 1087 proteins in 52 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1087; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
DNASU:839495eggNOG:ENOG410IVBZeggNOG:ENOG410YK71EMBL:CP002684EnsemblPlants:AT1G04550EnsemblPlants:AT1G04550.1entrez:839495
ExpressionAtlas:F4I5P9GeneID:839495GO:GO:0005634GO:GO:0006351GO:GO:0006355GO:GO:0009734Gramene:AT1G04550.1
hmmpanther:PTHR31734hmmpanther:PTHR31734:SF10InterPro:IPR000270InterPro:IPR003311InterPro:IPR033389PANTHER:PTHR31734PaxDb:F4I5P9
Pfam:PF02309Pfscan:PS51745PRIDE:F4I5P9PROSITE:PS51745ProteinModelPortal:F4I5P9Proteomes:UP000006548RefSeq:NP_849589.1
SMR:F4I5P9STRING:3702.AT1G04550.2TAIR:AT1G04550tair10-symbols:BDLtair10-symbols:IAA12UniGene:At.10466UniGene:At.10797
UniProt:F4I5P9
Coordinates (TAIR10) chr1:+:1240582..1241375
Molecular Weight (calculated) 18738.60 Da
IEP (calculated) 9.57
GRAVY (calculated) -0.43
Length 173 amino acids
Sequence (TAIR10)
(BLAST)
001: MRGVSELEVG KSNLPAESEL ELGLGLSLGG GAWKERGRIL TAKDFPSVGS KRSAESSSHQ GASPPRSSQV VGWPPIGLHR MNSLVNNQAM KAARAEEGDG
101: EKKVVKNDEL KDVSMKVNPK VQGLGFVKVN MDGVGIGRKV DMRAHSSYEN LAQTLEEMFF GMTGLYCFQM RTL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)