AT1G04540.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.993 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Calcium-dependent lipid-binding (CaLB domain) family protein | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Calcium-dependent lipid-binding (CaLB domain) family protein; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: Calcium-dependent lipid-binding (CaLB domain) family protein (TAIR:AT2G33320.1); Has 556 Blast hits to 454 proteins in 75 species: Archae - 0; Bacteria - 32; Metazoa - 92; Fungi - 46; Plants - 336; Viruses - 0; Other Eukaryotes - 50 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:1237256..1239061 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 66819.10 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 10.39 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.68 | ||||||||||||||||||||||||||||
| Length | 601 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSMMFPSFQL LELNIISAQD LAPVARKTKT YAVAWVHSER KLTTRVDYNG GTNPTWNDKF VFRVNEEFLY ADTSAVVIEI YALHWFRDVH VGTVRVLISN 101: LIPPNRRPGY RTSNNEYRRT PPPGMRFVAL QVRRTSGRPQ GILNIGVGLI DGSMRSMPLY THMDSSAVGY RDLLGEEDHH LQHLHLNSNK GSSKNPQSPS 201: SRQYQSVISR PELRRTKSDT SSMVVSDLLS RAERSRLANR QPASAIVSSE SETLPTTTDS DEKKSSEYTP PSKNLRVPRQ RYNSIESDLI NPSPMENHHV 301: VVSRRERHDV MPYSSYQQTG KTPRKKTRIE KQRSVKDYDR GRASPYLSKH GTPLRSNIIA STPMRSNGVG STPMRSNIIA MSPMHPNMVG STPMRTPMRS 401: NMVGSTPMRS NIVGSTPIRS NYMATPMRTH HDFGTPVRNL AGRRILTESE LGPSPSEVAD KLAKDRSHET ESSILSEWSI DESSIEGLRS KLERWRTELP 501: PLYDIGSSHI SSTDYDGASV PAATAGGGMS SRRKTPTTKK HNRRHTDGGN GLFSCFSKIC GVECSFVCGG GGGPMVSEGS TKKGGAGRVQ RTYSADDLSF 601: V |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)