AT1G04380.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.549 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
encodes a protein similar to a 2-oxoglutarate-dependent dioxygenase | ||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; FUNCTIONS IN: 2-oxoglutarate-dependent dioxygenase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: hypocotyl, flower, cultured cell; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT1G04350.1); Has 8121 Blast hits to 8082 proteins in 999 species: Archae - 0; Bacteria - 1115; Metazoa - 117; Fungi - 760; Plants - 4878; Viruses - 0; Other Eukaryotes - 1251 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:1177142..1178384 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 38620.10 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.55 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.23 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 345 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MVVKNSIKFN SQSERKSLEE TKVPPIFGLP PDALDDKKPT SDFAVPIIDF AGVHKSREAV VEKIKAAAEN WGIFQVINHG VPLSVLEEIQ NGVVRFHEED 101: PEVKKSYFSL DLTKTFIYHN NFELYSSSAG NWRDSFVCYM DPDPSNPEDL PVACRDAMIG YSKHVMSLGG LLFELLSEAL GLNSDTLKSM GCMKGLHMIC 201: HYYPPCPQPD QTLGTSKHSD NTFITILLQD NIGGLQILHQ DCWVDVSPLP GALIINIGDF LQLMTNDKFI SVDHRVLTNR VGPRISIACF FSSSMNPNST 301: VYGPIKELLS EENPPKYRDF TIPEYSKGYI EKGLDGTSHL SHYRI |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)