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AT1G04350.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.870
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
Curator
Summary (TAIR10)
encodes a protein whose sequence is similar to 2-oxoglutarate-dependent dioxygenase
Computational
Description (TAIR10)
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; CONTAINS InterPro DOMAIN/s: Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT5G59540.1); Has 8112 Blast hits to 8080 proteins in 977 species: Archae - 0; Bacteria - 1066; Metazoa - 116; Fungi - 819; Plants - 4883; Viruses - 0; Other Eukaryotes - 1228 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G04350-MONOMEREC:1.14.-.-eggNOG:COG3491eggNOG:KOG0143EMBL:AC000104EMBL:AK226341EMBL:AY050921
EMBL:AY113969EMBL:BT000698EMBL:CP002684EnsemblPlants:AT1G04350EnsemblPlants:AT1G04350.1entrez:839542Gene3D:2.60.120.330
GeneID:839542Genevisible:P93824GO:GO:0016491GO:GO:0046872Gramene:AT1G04350.1hmmpanther:PTHR10209hmmpanther:PTHR10209:SF122
HOGENOM:HOG000276735InParanoid:P93824InterPro:IPR005123InterPro:IPR026992InterPro:IPR027443KEGG:ath:AT1G04350OMA:HITEIPR
PaxDb:P93824Pfam:P93824Pfam:PF03171Pfam:PF14226Pfscan:PS51471PhylomeDB:P93824PIR:A86175
PRIDE:P93824PRO:PR:P93824PROSITE:PS51471ProteinModelPortal:P93824Proteomes:UP000006548RefSeq:NP_171930.1SMR:P93824
STRING:3702.AT1G04350.1SUPFAM:SSF51197TAIR:AT1G04350UniGene:At.22020UniProt:P93824
Coordinates (TAIR10) chr1:+:1165296..1166538
Molecular Weight (calculated) 40798.80 Da
IEP (calculated) 5.81
GRAVY (calculated) -0.25
Length 360 amino acids
Sequence (TAIR10)
(BLAST)
001: METKEFDSYS ERKAFDETKT GVKGLIDAHI TEIPRIFCLP QGSLSDKKPF VSTTDFAIPI IDFEGLHVSR EDIVGKIKDA ASNWGFFQVI NHGVPLNVLQ
101: EIQDGVRRFH EEAPEVKKTY FTRDATKRFV YNSNFDLYSS SSCVNWRDSF ACYMAPDPPN PEDLPVACRV AMFEYSKHMM RLGDLLFELL SEALGLRSDK
201: LKSMDCMKGL LLLCHYYPPC PQPDLTIGTN NHSDNSFLTI LLQDQIGGLQ IFHQDCWVDV SPIPGALVIN MGDFLQLITN DKVISVEHRV LANRAATPRI
301: SVASFFSTSM RPNSTVYGPI KELLSEENPS KYRVIDLKEY TEGYFKKGLD GTSYLSHYKI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)