suba logo
AT1G04190.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
cytosol 0.992
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:21166475 (2011): cytosol
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: stress-inducible protein, putative (TAIR:AT1G62740.1); Has 20389 Blast hits to 12924 proteins in 1156 species: Archae - 970; Bacteria - 7001; Metazoa - 4309; Fungi - 1260; Plants - 1634; Viruses - 0; Other Eukaryotes - 5215 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XNP1eggNOG:KOG0548eggNOG:KOG2449EMBL:AY080790
EMBL:AY114043EMBL:CP002684EnsemblPlants:AT1G04190EnsemblPlants:AT1G04190.1
entrez:839442Gene3D:1.25.40.10GeneID:839442GO:GO:0005829
Gramene:AT1G04190.1hmmpanther:PTHR22904hmmpanther:PTHR22904:SF289InterPro:IPR001440
InterPro:IPR011990InterPro:IPR013026InterPro:IPR019734KEGG:ath:AT1G04190
ncoils:CoilOMA:RKWKHGQPfam:PF00515Pfam:PF13414
Pfscan:PS50005Pfscan:PS50293PhylomeDB:Q8RXN1PROSITE:PS50005
PROSITE:PS50293Proteomes:UP000006548RefSeq:NP_171915.1SMART:SM00028
SMR:Q8RXN1STRING:3702.AT1G04190.1SUPFAM:SSF48452TAIR:AT1G04190
tair10-symbols:TPR3UniGene:At.43195UniProt:Q8RXN1
Coordinates (TAIR10) chr1:-:1106617..1108557
Molecular Weight (calculated) 37182.20 Da
IEP (calculated) 9.18
GRAVY (calculated) -0.61
Length 328 amino acids
Sequence (TAIR10)
(BLAST)
001: MAEKAGKATN GGEAEKSLKE KGNEFFKAGN FLKAAALYTQ AIKLDPSNAT LYSNRAAAFL SLVKLSKALA DAETTIKLNP QWEKGYFRKG CVLEAMEKYE
101: DALAAFEMAL QYNPQSTEVS RKIKRLGQLQ KEKQRAQELE NLRSNVDMAK HLESFKSEMS ENYGTEECWK EMFSFIVETM ETAVKSWHET SKVDTRVYFL
201: LDKEKTQTDK YAPAVNIDKA FQSPDTHSNC FTYLRQYAEE SFSKAACLVT PKSSISYPQV WKGVGSRKWK LGPNDGIFVQ FESPSLRKVW FISSSKEKGQ
301: TLCREPQALD IGAHEILPRI FKEKSKSS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)