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AT1G04170.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 1.000
ASURE: cytosol
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:27177187 (2016): nucleus
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25641898 (2015): plasma membrane
  • PMID:24134884 (2013): cytoskeleton microtubules
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:21166475 (2011): cytosol
  • PMID:19334764 (2009): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : eukaryotic translation initiation factor 2 gamma subunit
Curator
Summary (TAIR10)
protein synthesis initiation factor eIF2 gamma
Computational
Description (TAIR10)
eukaryotic translation initiation factor 2 gamma subunit (EIF2 GAMMA); CONTAINS InterPro DOMAIN/s: Translation elongation factor EFTu/EF1A, domain 2 (InterPro:IPR004161), Initiation factor eIF2 gamma, C-terminal (InterPro:IPR015256), Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal (InterPro:IPR009001), Protein synthesis factor, GTP-binding (InterPro:IPR000795), Translation elongation/initiation factor/Ribosomal, beta-barrel (InterPro:IPR009000); BEST Arabidopsis thaliana protein match is: Translation elongation factor EF1A/initiation factor IF2gamma family protein (TAIR:AT4G18330.2); Has 29259 Blast hits to 29225 proteins in 6532 species: Archae - 651; Bacteria - 17093; Metazoa - 4832; Fungi - 574; Plants - 965; Viruses - 0; Other Eukaryotes - 5144 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-81-MONOMEReggNOG:COG5257eggNOG:KOG0466EMBL:AC002411EMBL:AF353097EMBL:AY092973EMBL:BT002095
EMBL:CP002684EnsemblPlants:AT1G04170EnsemblPlants:AT1G04170.1entrez:839238Gene3D:3.40.50.300GeneID:839238GO:GO:0001731
GO:GO:0003743GO:GO:0003924GO:GO:0005525GO:GO:0005829Gramene:AT1G04170.1hmmpanther:PTHR23115hmmpanther:PTHR23115:SF164
HOGENOM:HOG000229292IntAct:O64490InterPro:IPR000795InterPro:IPR004161InterPro:IPR009000InterPro:IPR009001InterPro:IPR015256
InterPro:IPR027417KEGG:ath:AT1G04170KO:K03242OMA:RFPCERAPfam:PF00009Pfam:PF03144Pfam:PF09173
Pfscan:PS51722PhylomeDB:O64490PIR:T00956PRINTS:PR00315PROSITE:PS51722Proteomes:UP000006548Reactome:R-ATH-156827
Reactome:R-ATH-382556Reactome:R-ATH-72695Reactome:R-ATH-72702Reactome:R-ATH-72731RefSeq:NP_171913.1SMR:O64490STRING:3702.AT1G04170.1
SUPFAM:SSF50447SUPFAM:SSF50465SUPFAM:SSF52540TAIR:AT1G04170tair10-symbols:EIF2 GAMMAUniGene:At.22542UniGene:At.71591
UniProt:O64490
Coordinates (TAIR10) chr1:+:1097423..1099702
Molecular Weight (calculated) 50856.50 Da
IEP (calculated) 9.04
GRAVY (calculated) -0.02
Length 465 amino acids
Sequence (TAIR10)
(BLAST)
001: MSRNKGLAEQ DLKKLDVTVL HPLSPEVISR QATINIGTIG HVAHGKSTVV KAISGVQTVR FKNELERNIT IKLGYANAKI YKCEDEKCPR PMCYKAYGSG
101: KEDTPNCDVP GFENSKMKLL RHVSFVDCPG HDILMATMLN GAAIMDGALL LIAANETCPQ PQTSEHLAAV EIMQLKHIII LQNKIDLIQE NVAINQHEAI
201: QKFIMNTVAD AAPIVPVSAQ LKYNIDVVCE YIVKKIPIPE RNFVSPPNMI VIRSFDVNKP GYEVDEIKGG VAGGSILRGV LRVNQLIEIR PGIVTKDERG
301: NSKCTPIYSR IISLYAEQNE LQFAVPGGLI GVGTTMDPTL TRADRLVGQV LGEIGSLPDV FVELEVNFFL LRRLLGVRTK GSEKQGKVSK LTKGEILMLN
401: IGSMSTGAKV VGVKVDLAKL QLTAPVCTSK GEKVALSRRV EKHWRLIGWG QIQAGTTIEV PPSPF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)