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AT1G04130.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.995
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G56440.1); Has 5277 Blast hits to 4657 proteins in 398 species: Archae - 14; Bacteria - 308; Metazoa - 2191; Fungi - 837; Plants - 950; Viruses - 0; Other Eukaryotes - 977 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0457eggNOG:KOG0551EMBL:CP002684EnsemblPlants:AT1G04130EnsemblPlants:AT1G04130.1entrez:839276Gene3D:1.25.40.10
GeneID:839276GO:GO:0051879Gramene:AT1G04130.1hmmpanther:PTHR22904hmmpanther:PTHR22904:SF312InParanoid:F4I456InterPro:IPR011990
InterPro:IPR013026InterPro:IPR019734KEGG:ath:AT1G04130ncoils:CoilOMA:EFKAGNWPaxDb:F4I456Pfam:PF13181
Pfam:PF13414Pfscan:PS50293PRIDE:F4I456PROSITE:PS50293ProteinModelPortal:F4I456Proteomes:UP000006548RefSeq:NP_563702.1
SMART:SM00028SMR:F4I456STRING:3702.AT1G04130.1SUPFAM:SSF48452TAIR:AT1G04130tair10-symbols:AtTPR2tair10-symbols:TPR2
UniGene:At.21104UniGene:At.66834UniProt:F4I456
Coordinates (TAIR10) chr1:+:1073465..1075374
Molecular Weight (calculated) 40512.10 Da
IEP (calculated) 5.98
GRAVY (calculated) -0.57
Length 360 amino acids
Sequence (TAIR10)
(BLAST)
001: MALWMDAGAT PTTEKEKADL EAISALKEST AIEFKEEGNE CVRKGKKHYS EAIDCYTKAI SQGVLSDSET SILFSNRSHV NLLLGNYRRA LTDAEESMRL
101: SPHNVKAVYR AAKASMSLDL LNEAKSYCEK GIENDPSNED MKKLLKLVNS KKQEKEQHEA QASQAVVEAK ACLSAIENRG VKIGKAMYRE LTGLKKPMLD
201: KNNILHWPVL LLYAEAMTSD FVEDFCETDM FATHLDMMFS EDSPPLPWDK NNEYSRDVIE LYYEASSGTP LPRSRVLQYL LEGTKGSQAE TTGEEDTSAT
301: KTPSYLKGSS GMVKVNERRT LHDVLKEPKF VIPEIPVFYI VSKRSKFYKD FTAGKWTPPN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)