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AT1G04100.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : indoleacetic acid-induced protein 10
Curator
Summary (TAIR10)
Auxin induced gene, IAA10 (IAA10).
Computational
Description (TAIR10)
indoleacetic acid-induced protein 10 (IAA10); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: response to auxin stimulus, response to chitin; LOCATED IN: nucleus; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525), AUX/IAA protein (InterPro:IPR003311); BEST Arabidopsis thaliana protein match is: indole-3-acetic acid inducible 11 (TAIR:AT4G28640.3); Has 1513 Blast hits to 1512 proteins in 70 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1512; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Protein Annotations
BioGrid:24525eggNOG:ENOG410JTJUeggNOG:ENOG41107SCEMBL:AC002411
EMBL:AF332396EMBL:CP002684EMBL:U18412EnsemblPlants:AT1G04100
EnsemblPlants:AT1G04100.1entrez:839290GeneID:839290Genevisible:Q38828
GO:GO:0003700GO:GO:0005634GO:GO:0006351GO:GO:0009733
GO:GO:0009734GO:GO:0010200Gramene:AT1G04100.1hmmpanther:PTHR31734
hmmpanther:PTHR31734:SF6HOGENOM:HOG000238261InParanoid:Q38828IntAct:Q38828
InterPro:IPR000270InterPro:IPR003311InterPro:IPR033389KEGG:ath:AT1G04100
KO:K14484OMA:RTYRINSPANTHER:PTHR31734PaxDb:Q38828
PDB:5C7EPDBsum:5C7EPfam:PF02309Pfam:Q38828
Pfscan:PS51745PhylomeDB:Q38828PIR:S58496PRIDE:Q38828
PRO:PR:Q38828PROSITE:PS51745ProteinModelPortal:Q38828Proteomes:UP000006548
RefSeq:NP_171906.1SMR:Q38828STRING:3702.AT1G04100.1SUPFAM:SSF54277
TAIR:AT1G04100tair10-symbols:IAA10UniGene:At.21582UniProt:Q38828
Coordinates (TAIR10) chr1:+:1059809..1061026
Molecular Weight (calculated) 27880.00 Da
IEP (calculated) 6.04
GRAVY (calculated) -0.25
Length 261 amino acids
Sequence (TAIR10)
(BLAST)
001: MNGLQEVCSS SGSVMIGLPA EEDENAAHSS EDSSCPDESV SETELDLALG LSIGRRKVRS SLSSSSSSLT RESGTKRSAD SSPAAASNAT RQVAVGWPPL
101: RTYRINSLVN QAKSLATEGG LSSGIQKETT KSVVVAAKND DACFIKSSRT SMLVKVTMDG VIIGRKVDLN ALDSYAALEK TLDLMFFQIP SPVTRSNTQG
201: YKTIKETCTS KLLDGSSEYI ITYQDKDGDW MLVGDVPWQM FLGSVTRLRI MKTSIGAGVG K
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)